Atlas of Genetics and Cytogenetics in Oncology and Haematology


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UBN1 (ubinuclein 1)

Identity

Other aliasVT
VT4
HGNC (Hugo) UBN1
LocusID (NCBI) 29855
Atlas_Id 75434
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4847631 and ends at 4882401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CA10 (17q21.33) / UBN1 (16p13.3)LAMA5 (20q13.33) / UBN1 (16p13.3)UBN1 (16p13.3) / BLNK (10q24.1)
UBN1 (16p13.3) / LAMA5 (20q13.33)UBN1 (16p13.3) / MGRN1 (16p13.3)UBN1 (16p13.3) / UBALD1 (16p13.3)
UBN1 MGRN1UBN1 LAMA5UBN1 BLNK

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBN1   12506
Cards
Entrez_Gene (NCBI)UBN1  29855  ubinuclein 1
AliasesVT; VT4
GeneCards (Weizmann)UBN1
Ensembl hg19 (Hinxton)ENSG00000118900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118900 [Gene_View]  chr16:4847631-4882401 [Contig_View]  UBN1 [Vega]
ICGC DataPortalENSG00000118900
TCGA cBioPortalUBN1
AceView (NCBI)UBN1
Genatlas (Paris)UBN1
WikiGenes29855
SOURCE (Princeton)UBN1
Genetics Home Reference (NIH)UBN1
Genomic and cartography
GoldenPath hg38 (UCSC)UBN1  -     chr16:4847631-4882401 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBN1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblUBN1 - 16p13.3 [CytoView hg19]  UBN1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIUBN1 [Mapview hg19]  UBN1 [Mapview hg38]
OMIM609771   
Gene and transcription
Genbank (Entrez)AA742357 AF108460 AF108461 AK022652 AK056282
RefSeq transcript (Entrez)NM_001079514 NM_001288656 NM_016936
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBN1
Cluster EST : UnigeneHs.440219 [ NCBI ]
CGAP (NCI)Hs.440219
Alternative Splicing GalleryENSG00000118900
Gene ExpressionUBN1 [ NCBI-GEO ]   UBN1 [ EBI - ARRAY_EXPRESS ]   UBN1 [ SEEK ]   UBN1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29855
GTEX Portal (Tissue expression)UBN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPG3
Splice isoforms : SwissVarQ9NPG3
PhosPhoSitePlusQ9NPG3
Domains : Interpro (EBI)HRD    Ubinuclein-1    UBN_middle_dom   
Domain families : Pfam (Sanger)HUN (PF08729)    UBN_AB (PF14075)   
Domain families : Pfam (NCBI)pfam08729    pfam14075   
Conserved Domain (NCBI)UBN1
DMDM Disease mutations29855
Blocks (Seattle)UBN1
PDB (SRS)4ZBJ   
PDB (PDBSum)4ZBJ   
PDB (IMB)4ZBJ   
PDB (RSDB)4ZBJ   
Structural Biology KnowledgeBase4ZBJ   
SCOP (Structural Classification of Proteins)4ZBJ   
CATH (Classification of proteins structures)4ZBJ   
SuperfamilyQ9NPG3
Human Protein AtlasENSG00000118900
Peptide AtlasQ9NPG3
HPRD11660
IPIIPI00099834   IPI00929172   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPG3
IntAct (EBI)Q9NPG3
FunCoupENSG00000118900
BioGRIDUBN1
STRING (EMBL)UBN1
ZODIACUBN1
Ontologies - Pathways
QuickGOQ9NPG3
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  bicellular tight junction  DNA replication-independent nucleosome assembly  regulation of transcription from RNA polymerase II promoter  negative regulation of phosphatase activity  viral process  covalent chromatin modification  nuclear body  PML body  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  bicellular tight junction  DNA replication-independent nucleosome assembly  regulation of transcription from RNA polymerase II promoter  negative regulation of phosphatase activity  viral process  covalent chromatin modification  nuclear body  PML body  
NDEx NetworkUBN1
Atlas of Cancer Signalling NetworkUBN1
Wikipedia pathwaysUBN1
Orthology - Evolution
OrthoDB29855
GeneTree (enSembl)ENSG00000118900
Phylogenetic Trees/Animal Genes : TreeFamUBN1
HOVERGENQ9NPG3
HOGENOMQ9NPG3
Homologs : HomoloGeneUBN1
Homology/Alignments : Family Browser (UCSC)UBN1
Gene fusions - Rearrangements
Fusion: TCGAUBN1 MGRN1
Fusion: TCGAUBN1 LAMA5
Fusion: TCGAUBN1 BLNK
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBN1
dbVarUBN1
ClinVarUBN1
1000_GenomesUBN1 
Exome Variant ServerUBN1
ExAC (Exome Aggregation Consortium)UBN1 (select the gene name)
Genetic variants : HAPMAP29855
Genomic Variants (DGV)UBN1 [DGVbeta]
DECIPHERUBN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBN1 
Mutations
ICGC Data PortalUBN1 
TCGA Data PortalUBN1 
Broad Tumor PortalUBN1
OASIS PortalUBN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBN1
DgiDB (Drug Gene Interaction Database)UBN1
DoCM (Curated mutations)UBN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBN1 (select a term)
intoGenUBN1
Cancer3DUBN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609771   
Orphanet
MedgenUBN1
Genetic Testing Registry UBN1
NextProtQ9NPG3 [Medical]
TSGene29855
GENETestsUBN1
Target ValidationUBN1
Huge Navigator UBN1 [HugePedia]
snp3D : Map Gene to Disease29855
BioCentury BCIQUBN1
ClinGenUBN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29855
Chemical/Pharm GKB GenePA37153
Clinical trialUBN1
Miscellaneous
canSAR (ICR)UBN1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBN1
EVEXUBN1
GoPubMedUBN1
iHOPUBN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:10 CEST 2017

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