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UBN1 (ubinuclein 1)

Identity

Alias (NCBI)VT
VT4
HGNC (Hugo) UBN1
LocusID (NCBI) 29855
Atlas_Id 75434
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4848380 and ends at 4882401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CA10 (17q21.33) / UBN1 (16p13.3)LAMA5 (20q13.33) / UBN1 (16p13.3)UBN1 (16p13.3) / BLNK (10q24.1)
UBN1 (16p13.3) / LAMA5 (20q13.33)UBN1 (16p13.3) / MGRN1 (16p13.3)UBN1 (16p13.3) / UBALD1 (16p13.3)
UBN1 MGRN1UBN1 LAMA5UBN1 BLNK

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UBN1   12506
Cards
Entrez_Gene (NCBI)UBN1    ubinuclein 1
AliasesVT; VT4
GeneCards (Weizmann)UBN1
Ensembl hg19 (Hinxton)ENSG00000118900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118900 [Gene_View]  ENSG00000118900 [Sequence]  chr16:4848380-4882401 [Contig_View]  UBN1 [Vega]
ICGC DataPortalENSG00000118900
TCGA cBioPortalUBN1
AceView (NCBI)UBN1
Genatlas (Paris)UBN1
SOURCE (Princeton)UBN1
Genetics Home Reference (NIH)UBN1
Genomic and cartography
GoldenPath hg38 (UCSC)UBN1  -     chr16:4848380-4882401 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBN1  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathUBN1 - 16p13.3 [CytoView hg19]  UBN1 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000118900
Genome Data Viewer NCBIUBN1 [Mapview hg19]  
OMIM609771   
Gene and transcription
Genbank (Entrez)AA742357 AF108460 AF108461 AK022652 AK056282
RefSeq transcript (Entrez)NM_001079514 NM_001288656 NM_016936
Consensus coding sequences : CCDS (NCBI)UBN1
Gene ExpressionUBN1 [ NCBI-GEO ]   UBN1 [ EBI - ARRAY_EXPRESS ]   UBN1 [ SEEK ]   UBN1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBN1 [ Firebrowse - Broad ]
GenevisibleExpression of UBN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29855
GTEX Portal (Tissue expression)UBN1
Human Protein AtlasENSG00000118900-UBN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPG3
PhosPhoSitePlusQ9NPG3
Domains : Interpro (EBI)HRD    Ubinuclein-1    UBN_middle_dom   
Domain families : Pfam (Sanger)HUN (PF08729)    UBN_AB (PF14075)   
Domain families : Pfam (NCBI)pfam08729    pfam14075   
Conserved Domain (NCBI)UBN1
PDB (RSDB)4ZBJ   
PDB Europe4ZBJ   
PDB (PDBSum)4ZBJ   
PDB (IMB)4ZBJ   
Structural Biology KnowledgeBase4ZBJ   
SCOP (Structural Classification of Proteins)4ZBJ   
CATH (Classification of proteins structures)4ZBJ   
SuperfamilyQ9NPG3
AlphaFold pdb e-kbQ9NPG3   
Human Protein Atlas [tissue]ENSG00000118900-UBN1 [tissue]
HPRD11660
Protein Interaction databases
DIP (DOE-UCLA)Q9NPG3
IntAct (EBI)Q9NPG3
BioGRIDUBN1
STRING (EMBL)UBN1
ZODIACUBN1
Ontologies - Pathways
QuickGOQ9NPG3
Ontology : AmiGODNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  bicellular tight junction  DNA replication-independent nucleosome assembly  nuclear body  PML body  centriolar satellite  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  bicellular tight junction  DNA replication-independent nucleosome assembly  nuclear body  PML body  centriolar satellite  
NDEx NetworkUBN1
Atlas of Cancer Signalling NetworkUBN1
Wikipedia pathwaysUBN1
Orthology - Evolution
OrthoDB29855
GeneTree (enSembl)ENSG00000118900
Phylogenetic Trees/Animal Genes : TreeFamUBN1
Homologs : HomoloGeneUBN1
Homology/Alignments : Family Browser (UCSC)UBN1
Gene fusions - Rearrangements
Fusion : QuiverUBN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBN1
dbVarUBN1
ClinVarUBN1
MonarchUBN1
1000_GenomesUBN1 
Exome Variant ServerUBN1
GNOMAD BrowserENSG00000118900
Varsome BrowserUBN1
ACMGUBN1 variants
VarityQ9NPG3
Genomic Variants (DGV)UBN1 [DGVbeta]
DECIPHERUBN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBN1 
Mutations
ICGC Data PortalUBN1 
TCGA Data PortalUBN1 
Broad Tumor PortalUBN1
OASIS PortalUBN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBN1
Mutations and Diseases : HGMDUBN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUBN1
DgiDB (Drug Gene Interaction Database)UBN1
DoCM (Curated mutations)UBN1
CIViC (Clinical Interpretations of Variants in Cancer)UBN1
Cancer3DUBN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609771   
Orphanet
DisGeNETUBN1
MedgenUBN1
Genetic Testing Registry UBN1
NextProtQ9NPG3 [Medical]
GENETestsUBN1
Target ValidationUBN1
Huge Navigator UBN1 [HugePedia]
ClinGenUBN1
Clinical trials, drugs, therapy
MyCancerGenomeUBN1
Protein Interactions : CTDUBN1
Pharm GKB GenePA37153
PharosQ9NPG3
Clinical trialUBN1
Miscellaneous
canSAR (ICR)UBN1
HarmonizomeUBN1
DataMed IndexUBN1
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUBN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:45 CEST 2021

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