Atlas of Genetics and Cytogenetics in Oncology and Haematology


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UBN2 (ubinuclein 2)

Identity

Alias_symbol (synonym)FLJ25778
KIAA2030
Other alias-
HGNC (Hugo) UBN2
LocusID (NCBI) 254048
Atlas_Id 75435
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 138916231 and ends at 138992982 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LUC7L2 (7q34) / UBN2 (7q34)NEXN (1p31.1) / UBN2 (7q34)PWRN1 (15q11.2) / UBN2 (7q34)
UBN2 (7q34) / FUNDC2P2 (2p11.2)UBN2 (7q34) / TMEM41B (11p15.4)UBN2 (7q34) / UBN2 (7q34)
USP32 (17q23.1) / UBN2 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBN2   21931
Cards
Entrez_Gene (NCBI)UBN2  254048  ubinuclein 2
Aliases
GeneCards (Weizmann)UBN2
Ensembl hg19 (Hinxton)ENSG00000157741 [Gene_View]  chr7:138916231-138992982 [Contig_View]  UBN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157741 [Gene_View]  chr7:138916231-138992982 [Contig_View]  UBN2 [Vega]
ICGC DataPortalENSG00000157741
TCGA cBioPortalUBN2
AceView (NCBI)UBN2
Genatlas (Paris)UBN2
WikiGenes254048
SOURCE (Princeton)UBN2
Genetics Home Reference (NIH)UBN2
Genomic and cartography
GoldenPath hg19 (UCSC)UBN2  -     chr7:138916231-138992982 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UBN2  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblUBN2 - 7q34 [CytoView hg19]  UBN2 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIUBN2 [Mapview hg19]  UBN2 [Mapview hg38]
OMIM613841   
Gene and transcription
Genbank (Entrez)AB107352 AI239540 AI803206 AK098644 AK125956
RefSeq transcript (Entrez)NM_173569
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)UBN2
Cluster EST : UnigeneHs.511486 [ NCBI ]
CGAP (NCI)Hs.511486
Alternative Splicing GalleryENSG00000157741
Gene ExpressionUBN2 [ NCBI-GEO ]   UBN2 [ EBI - ARRAY_EXPRESS ]   UBN2 [ SEEK ]   UBN2 [ MEM ]
Gene Expression Viewer (FireBrowse)UBN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254048
GTEX Portal (Tissue expression)UBN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZU65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZU65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZU65
Splice isoforms : SwissVarQ6ZU65
PhosPhoSitePlusQ6ZU65
Domains : Interpro (EBI)HRD    Ubinuclein-2    Ubinuclein/Yemanuclein    UBN_middle_dom   
Domain families : Pfam (Sanger)HUN (PF08729)    UBN_AB (PF14075)   
Domain families : Pfam (NCBI)pfam08729    pfam14075   
Conserved Domain (NCBI)UBN2
DMDM Disease mutations254048
Blocks (Seattle)UBN2
SuperfamilyQ6ZU65
Human Protein AtlasENSG00000157741
Peptide AtlasQ6ZU65
IPIIPI00785015   IPI00854561   IPI00743986   IPI00946065   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZU65
IntAct (EBI)Q6ZU65
FunCoupENSG00000157741
BioGRIDUBN2
STRING (EMBL)UBN2
ZODIACUBN2
Ontologies - Pathways
QuickGOQ6ZU65
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  extracellular space  nucleus  nucleoplasm  regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  extracellular space  nucleus  nucleoplasm  regulation of transcription from RNA polymerase II promoter  
NDEx NetworkUBN2
Atlas of Cancer Signalling NetworkUBN2
Wikipedia pathwaysUBN2
Orthology - Evolution
OrthoDB254048
GeneTree (enSembl)ENSG00000157741
Phylogenetic Trees/Animal Genes : TreeFamUBN2
HOVERGENQ6ZU65
HOGENOMQ6ZU65
Homologs : HomoloGeneUBN2
Homology/Alignments : Family Browser (UCSC)UBN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBN2
dbVarUBN2
ClinVarUBN2
1000_GenomesUBN2 
Exome Variant ServerUBN2
ExAC (Exome Aggregation Consortium)UBN2 (select the gene name)
Genetic variants : HAPMAP254048
Genomic Variants (DGV)UBN2 [DGVbeta]
DECIPHER (Syndromes)7:138916231-138992982  ENSG00000157741
CONAN: Copy Number AnalysisUBN2 
Mutations
ICGC Data PortalUBN2 
TCGA Data PortalUBN2 
Broad Tumor PortalUBN2
OASIS PortalUBN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBN2
DgiDB (Drug Gene Interaction Database)UBN2
DoCM (Curated mutations)UBN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBN2 (select a term)
intoGenUBN2
Cancer3DUBN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613841   
Orphanet
MedgenUBN2
Genetic Testing Registry UBN2
NextProtQ6ZU65 [Medical]
TSGene254048
GENETestsUBN2
Huge Navigator UBN2 [HugePedia]
snp3D : Map Gene to Disease254048
BioCentury BCIQUBN2
ClinGenUBN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254048
Chemical/Pharm GKB GenePA164727415
Clinical trialUBN2
Miscellaneous
canSAR (ICR)UBN2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBN2
EVEXUBN2
GoPubMedUBN2
iHOPUBN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:50:40 CET 2017

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