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UBOX5 (U-box domain containing 5)

Identity

Alias_symbol (synonym)UIP5
KIAA0860
Ubce7ip5
RNF37
Other aliasUBCE7IP5
hUIP5
HGNC (Hugo) UBOX5
LocusID (NCBI) 22888
Atlas_Id 47440
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3107573 and ends at 3159910 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UBOX5 (20p13) / RP5-1187M17.10 ()UBOX5 20p13 RP5-1187M17.10

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBOX5   17777
Cards
Entrez_Gene (NCBI)UBOX5  22888  U-box domain containing 5
AliasesRNF37; UBCE7IP5; UIP5; hUIP5
GeneCards (Weizmann)UBOX5
Ensembl hg19 (Hinxton)ENSG00000185019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185019 [Gene_View]  chr20:3107573-3159910 [Contig_View]  UBOX5 [Vega]
ICGC DataPortalENSG00000185019
TCGA cBioPortalUBOX5
AceView (NCBI)UBOX5
Genatlas (Paris)UBOX5
WikiGenes22888
SOURCE (Princeton)UBOX5
Genetics Home Reference (NIH)UBOX5
Genomic and cartography
GoldenPath hg38 (UCSC)UBOX5  -     chr20:3107573-3159910 -  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBOX5  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblUBOX5 - 20p13 [CytoView hg19]  UBOX5 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIUBOX5 [Mapview hg19]  UBOX5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB020667 AK022444 AK222570 AK222876 BC000515
RefSeq transcript (Entrez)NM_001267584 NM_014948 NM_199415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBOX5
Cluster EST : UnigeneHs.654646 [ NCBI ]
CGAP (NCI)Hs.654646
Alternative Splicing GalleryENSG00000185019
Gene ExpressionUBOX5 [ NCBI-GEO ]   UBOX5 [ EBI - ARRAY_EXPRESS ]   UBOX5 [ SEEK ]   UBOX5 [ MEM ]
Gene Expression Viewer (FireBrowse)UBOX5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22888
GTEX Portal (Tissue expression)UBOX5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94941   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94941  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94941
Splice isoforms : SwissVarO94941
PhosPhoSitePlusO94941
Domaine pattern : Prosite (Expaxy)U_BOX (PS51698)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Ubox_domain    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)U-box (PF04564)   
Domain families : Pfam (NCBI)pfam04564   
Domain families : Smart (EMBL)Ubox (SM00504)  
Conserved Domain (NCBI)UBOX5
DMDM Disease mutations22888
Blocks (Seattle)UBOX5
SuperfamilyO94941
Human Protein AtlasENSG00000185019
Peptide AtlasO94941
HPRD15605
IPIIPI00007269   IPI00719838   IPI00795641   
Protein Interaction databases
DIP (DOE-UCLA)O94941
IntAct (EBI)O94941
FunCoupENSG00000185019
BioGRIDUBOX5
STRING (EMBL)UBOX5
ZODIACUBOX5
Ontologies - Pathways
QuickGOO94941
Ontology : AmiGOprotein polyubiquitination  protein binding  nucleus  nucleoplasm  focal adhesion  zinc ion binding  nuclear body  ubiquitin protein ligase binding  ubiquitin-ubiquitin ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein binding  nucleus  nucleoplasm  focal adhesion  zinc ion binding  nuclear body  ubiquitin protein ligase binding  ubiquitin-ubiquitin ligase activity  
Pathways : KEGGUbiquitin mediated proteolysis   
NDEx NetworkUBOX5
Atlas of Cancer Signalling NetworkUBOX5
Wikipedia pathwaysUBOX5
Orthology - Evolution
OrthoDB22888
GeneTree (enSembl)ENSG00000185019
Phylogenetic Trees/Animal Genes : TreeFamUBOX5
HOVERGENO94941
HOGENOMO94941
Homologs : HomoloGeneUBOX5
Homology/Alignments : Family Browser (UCSC)UBOX5
Gene fusions - Rearrangements
Fusion: TCGAUBOX5 20p13 RP5-1187M17.10 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBOX5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBOX5
dbVarUBOX5
ClinVarUBOX5
1000_GenomesUBOX5 
Exome Variant ServerUBOX5
ExAC (Exome Aggregation Consortium)UBOX5 (select the gene name)
Genetic variants : HAPMAP22888
Genomic Variants (DGV)UBOX5 [DGVbeta]
DECIPHERUBOX5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBOX5 
Mutations
ICGC Data PortalUBOX5 
TCGA Data PortalUBOX5 
Broad Tumor PortalUBOX5
OASIS PortalUBOX5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBOX5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBOX5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBOX5
DgiDB (Drug Gene Interaction Database)UBOX5
DoCM (Curated mutations)UBOX5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBOX5 (select a term)
intoGenUBOX5
Cancer3DUBOX5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBOX5
Genetic Testing Registry UBOX5
NextProtO94941 [Medical]
TSGene22888
GENETestsUBOX5
Target ValidationUBOX5
Huge Navigator UBOX5 [HugePedia]
snp3D : Map Gene to Disease22888
BioCentury BCIQUBOX5
ClinGenUBOX5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22888
Chemical/Pharm GKB GenePA134991794
Clinical trialUBOX5
Miscellaneous
canSAR (ICR)UBOX5 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBOX5
EVEXUBOX5
GoPubMedUBOX5
iHOPUBOX5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:11:02 CEST 2017

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