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UBP1 (upstream binding protein 1 (LBP-1a))

Identity

Alias_symbol (synonym)LBP-1a
Other aliasLBP-1B
LBP1A
LBP1B
HGNC (Hugo) UBP1
LocusID (NCBI) 7342
Atlas_Id 47021
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 33388336 and ends at 33440378 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAB14 (9q33.2) / UBP1 (3p22.3)UBP1 (3p22.3) / RBM42 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBP1   12507
Cards
Entrez_Gene (NCBI)UBP1  7342  upstream binding protein 1 (LBP-1a)
AliasesLBP-1B; LBP-1a; LBP1A; LBP1B
GeneCards (Weizmann)UBP1
Ensembl hg19 (Hinxton)ENSG00000153560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153560 [Gene_View]  chr3:33388336-33440378 [Contig_View]  UBP1 [Vega]
ICGC DataPortalENSG00000153560
TCGA cBioPortalUBP1
AceView (NCBI)UBP1
Genatlas (Paris)UBP1
WikiGenes7342
SOURCE (Princeton)UBP1
Genetics Home Reference (NIH)UBP1
Genomic and cartography
GoldenPath hg38 (UCSC)UBP1  -     chr3:33388336-33440378 -  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBP1  -     3p22.3   [Description]    (hg19-Feb_2009)
EnsemblUBP1 - 3p22.3 [CytoView hg19]  UBP1 - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBIUBP1 [Mapview hg19]  UBP1 [Mapview hg38]
OMIM609784   
Gene and transcription
Genbank (Entrez)AF198487 AK023274 AK023278 AK023322 AK027177
RefSeq transcript (Entrez)NM_001128160 NM_001128161 NM_014517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBP1
Cluster EST : UnigeneHs.729120 [ NCBI ]
CGAP (NCI)Hs.729120
Alternative Splicing GalleryENSG00000153560
Gene ExpressionUBP1 [ NCBI-GEO ]   UBP1 [ EBI - ARRAY_EXPRESS ]   UBP1 [ SEEK ]   UBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7342
GTEX Portal (Tissue expression)UBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZI7
Splice isoforms : SwissVarQ9NZI7
PhosPhoSitePlusQ9NZI7
Domains : Interpro (EBI)CP2    SAM/pointed   
Domain families : Pfam (Sanger)CP2 (PF04516)   
Domain families : Pfam (NCBI)pfam04516   
Conserved Domain (NCBI)UBP1
DMDM Disease mutations7342
Blocks (Seattle)UBP1
SuperfamilyQ9NZI7
Human Protein AtlasENSG00000153560
Peptide AtlasQ9NZI7
HPRD10291
IPIIPI00005018   IPI00294870   IPI00927387   IPI00927195   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZI7
IntAct (EBI)Q9NZI7
FunCoupENSG00000153560
BioGRIDUBP1
STRING (EMBL)UBP1
ZODIACUBP1
Ontologies - Pathways
QuickGOQ9NZI7
Ontology : AmiGOangiogenesis  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  viral genome replication  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIangiogenesis  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  nucleus  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  viral genome replication  negative regulation of transcription, DNA-templated  
NDEx NetworkUBP1
Atlas of Cancer Signalling NetworkUBP1
Wikipedia pathwaysUBP1
Orthology - Evolution
OrthoDB7342
GeneTree (enSembl)ENSG00000153560
Phylogenetic Trees/Animal Genes : TreeFamUBP1
HOVERGENQ9NZI7
HOGENOMQ9NZI7
Homologs : HomoloGeneUBP1
Homology/Alignments : Family Browser (UCSC)UBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBP1
dbVarUBP1
ClinVarUBP1
1000_GenomesUBP1 
Exome Variant ServerUBP1
ExAC (Exome Aggregation Consortium)UBP1 (select the gene name)
Genetic variants : HAPMAP7342
Genomic Variants (DGV)UBP1 [DGVbeta]
DECIPHERUBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBP1 
Mutations
ICGC Data PortalUBP1 
TCGA Data PortalUBP1 
Broad Tumor PortalUBP1
OASIS PortalUBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBP1
DgiDB (Drug Gene Interaction Database)UBP1
DoCM (Curated mutations)UBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBP1 (select a term)
intoGenUBP1
Cancer3DUBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609784   
Orphanet
MedgenUBP1
Genetic Testing Registry UBP1
NextProtQ9NZI7 [Medical]
TSGene7342
GENETestsUBP1
Target ValidationUBP1
Huge Navigator UBP1 [HugePedia]
snp3D : Map Gene to Disease7342
BioCentury BCIQUBP1
ClinGenUBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7342
Chemical/Pharm GKB GenePA37154
Clinical trialUBP1
Miscellaneous
canSAR (ICR)UBP1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBP1
EVEXUBP1
GoPubMedUBP1
iHOPUBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:44 CEST 2017

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