Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UBQLN3 (ubiquilin 3)

Identity

Alias_symbol (synonym)TUP-1
Other alias
HGNC (Hugo) UBQLN3
LocusID (NCBI) 50613
Atlas_Id 75438
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5507300 and ends at 5509985 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBQLN3   12510
Cards
Entrez_Gene (NCBI)UBQLN3  50613  ubiquilin 3
AliasesTUP-1
GeneCards (Weizmann)UBQLN3
Ensembl hg19 (Hinxton)ENSG00000175520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175520 [Gene_View]  chr11:5507300-5509985 [Contig_View]  UBQLN3 [Vega]
ICGC DataPortalENSG00000175520
TCGA cBioPortalUBQLN3
AceView (NCBI)UBQLN3
Genatlas (Paris)UBQLN3
WikiGenes50613
SOURCE (Princeton)UBQLN3
Genetics Home Reference (NIH)UBQLN3
Genomic and cartography
GoldenPath hg38 (UCSC)UBQLN3  -     chr11:5507300-5509985 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBQLN3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblUBQLN3 - 11p15.4 [CytoView hg19]  UBQLN3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIUBQLN3 [Mapview hg19]  UBQLN3 [Mapview hg38]
OMIM605473   
Gene and transcription
Genbank (Entrez)AA725499 AF230481 BC036743 BF979648 BI828244
RefSeq transcript (Entrez)NM_001347096 NM_017481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBQLN3
Cluster EST : UnigeneHs.189184 [ NCBI ]
CGAP (NCI)Hs.189184
Alternative Splicing GalleryENSG00000175520
Gene ExpressionUBQLN3 [ NCBI-GEO ]   UBQLN3 [ EBI - ARRAY_EXPRESS ]   UBQLN3 [ SEEK ]   UBQLN3 [ MEM ]
Gene Expression Viewer (FireBrowse)UBQLN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50613
GTEX Portal (Tissue expression)UBQLN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H347   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H347  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H347
Splice isoforms : SwissVarQ9H347
PhosPhoSitePlusQ9H347
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)STI1_HS-bd    UBA    UBA-like    Ubiquilin    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)UBA (PF00627)    ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00627    pfam00240   
Domain families : Smart (EMBL)STI1 (SM00727)  UBA (SM00165)  UBQ (SM00213)  
Conserved Domain (NCBI)UBQLN3
DMDM Disease mutations50613
Blocks (Seattle)UBQLN3
PDB (SRS)1WX7    1YQB    2DAH   
PDB (PDBSum)1WX7    1YQB    2DAH   
PDB (IMB)1WX7    1YQB    2DAH   
PDB (RSDB)1WX7    1YQB    2DAH   
Structural Biology KnowledgeBase1WX7    1YQB    2DAH   
SCOP (Structural Classification of Proteins)1WX7    1YQB    2DAH   
CATH (Classification of proteins structures)1WX7    1YQB    2DAH   
SuperfamilyQ9H347
Human Protein AtlasENSG00000175520
Peptide AtlasQ9H347
HPRD05684
IPIIPI00100369   IPI00657817   
Protein Interaction databases
DIP (DOE-UCLA)Q9H347
IntAct (EBI)Q9H347
FunCoupENSG00000175520
BioGRIDUBQLN3
STRING (EMBL)UBQLN3
ZODIACUBQLN3
Ontologies - Pathways
QuickGOQ9H347
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkUBQLN3
Atlas of Cancer Signalling NetworkUBQLN3
Wikipedia pathwaysUBQLN3
Orthology - Evolution
OrthoDB50613
GeneTree (enSembl)ENSG00000175520
Phylogenetic Trees/Animal Genes : TreeFamUBQLN3
HOVERGENQ9H347
HOGENOMQ9H347
Homologs : HomoloGeneUBQLN3
Homology/Alignments : Family Browser (UCSC)UBQLN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBQLN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBQLN3
dbVarUBQLN3
ClinVarUBQLN3
1000_GenomesUBQLN3 
Exome Variant ServerUBQLN3
ExAC (Exome Aggregation Consortium)UBQLN3 (select the gene name)
Genetic variants : HAPMAP50613
Genomic Variants (DGV)UBQLN3 [DGVbeta]
DECIPHERUBQLN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBQLN3 
Mutations
ICGC Data PortalUBQLN3 
TCGA Data PortalUBQLN3 
Broad Tumor PortalUBQLN3
OASIS PortalUBQLN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBQLN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBQLN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBQLN3
DgiDB (Drug Gene Interaction Database)UBQLN3
DoCM (Curated mutations)UBQLN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBQLN3 (select a term)
intoGenUBQLN3
Cancer3DUBQLN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605473   
Orphanet
MedgenUBQLN3
Genetic Testing Registry UBQLN3
NextProtQ9H347 [Medical]
TSGene50613
GENETestsUBQLN3
Target ValidationUBQLN3
Huge Navigator UBQLN3 [HugePedia]
snp3D : Map Gene to Disease50613
BioCentury BCIQUBQLN3
ClinGenUBQLN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50613
Chemical/Pharm GKB GenePA37157
Clinical trialUBQLN3
Miscellaneous
canSAR (ICR)UBQLN3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBQLN3
EVEXUBQLN3
GoPubMedUBQLN3
iHOPUBQLN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:43:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.