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UBQLN3 (ubiquilin 3)

Identity

Alias (NCBI)TUP-1
HGNC (Hugo) UBQLN3
HGNC Alias symbTUP-1
LocusID (NCBI) 50613
Atlas_Id 75438
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5507300 and ends at 5509957 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UBQLN3   12510
Cards
Entrez_Gene (NCBI)UBQLN3    ubiquilin 3
AliasesTUP-1
GeneCards (Weizmann)UBQLN3
Ensembl hg19 (Hinxton)ENSG00000175520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175520 [Gene_View]  ENSG00000175520 [Sequence]  chr11:5507300-5509957 [Contig_View]  UBQLN3 [Vega]
ICGC DataPortalENSG00000175520
TCGA cBioPortalUBQLN3
AceView (NCBI)UBQLN3
Genatlas (Paris)UBQLN3
SOURCE (Princeton)UBQLN3
Genetics Home Reference (NIH)UBQLN3
Genomic and cartography
GoldenPath hg38 (UCSC)UBQLN3  -     chr11:5507300-5509957 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBQLN3  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathUBQLN3 - 11p15.4 [CytoView hg19]  UBQLN3 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000175520
Genome Data Viewer NCBIUBQLN3 [Mapview hg19]  
OMIM605473   
Gene and transcription
Genbank (Entrez)AA725499 AF230481 BC036743 BF979648 BI828244
RefSeq transcript (Entrez)NM_001347096 NM_017481
Consensus coding sequences : CCDS (NCBI)UBQLN3
Gene ExpressionUBQLN3 [ NCBI-GEO ]   UBQLN3 [ EBI - ARRAY_EXPRESS ]   UBQLN3 [ SEEK ]   UBQLN3 [ MEM ]
Gene Expression Viewer (FireBrowse)UBQLN3 [ Firebrowse - Broad ]
GenevisibleExpression of UBQLN3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50613
GTEX Portal (Tissue expression)UBQLN3
Human Protein AtlasENSG00000175520-UBQLN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H347   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H347  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H347
PhosPhoSitePlusQ9H347
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)STI1_HS-bd    UBA    UBA-like_sf    Ubiquitin-like_dom    Ubiquitin-like_domsf   
Domain families : Pfam (Sanger)UBA (PF00627)    ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00627    pfam00240   
Domain families : Smart (EMBL)STI1 (SM00727)  UBA (SM00165)  UBQ (SM00213)  
Conserved Domain (NCBI)UBQLN3
PDB (RSDB)1WX7    1YQB    2DAH   
PDB Europe1WX7    1YQB    2DAH   
PDB (PDBSum)1WX7    1YQB    2DAH   
PDB (IMB)1WX7    1YQB    2DAH   
Structural Biology KnowledgeBase1WX7    1YQB    2DAH   
SCOP (Structural Classification of Proteins)1WX7    1YQB    2DAH   
CATH (Classification of proteins structures)1WX7    1YQB    2DAH   
SuperfamilyQ9H347
AlphaFold pdb e-kbQ9H347   
Human Protein Atlas [tissue]ENSG00000175520-UBQLN3 [tissue]
HPRD05684
Protein Interaction databases
DIP (DOE-UCLA)Q9H347
IntAct (EBI)Q9H347
BioGRIDUBQLN3
STRING (EMBL)UBQLN3
ZODIACUBQLN3
Ontologies - Pathways
QuickGOQ9H347
Ontology : AmiGOprotein binding  cytosol  ubiquitin-dependent protein catabolic process  polyubiquitin modification-dependent protein binding  
Ontology : EGO-EBIprotein binding  cytosol  ubiquitin-dependent protein catabolic process  polyubiquitin modification-dependent protein binding  
NDEx NetworkUBQLN3
Atlas of Cancer Signalling NetworkUBQLN3
Wikipedia pathwaysUBQLN3
Orthology - Evolution
OrthoDB50613
GeneTree (enSembl)ENSG00000175520
Phylogenetic Trees/Animal Genes : TreeFamUBQLN3
Homologs : HomoloGeneUBQLN3
Homology/Alignments : Family Browser (UCSC)UBQLN3
Gene fusions - Rearrangements
Fusion : QuiverUBQLN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBQLN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBQLN3
dbVarUBQLN3
ClinVarUBQLN3
MonarchUBQLN3
1000_GenomesUBQLN3 
Exome Variant ServerUBQLN3
GNOMAD BrowserENSG00000175520
Varsome BrowserUBQLN3
ACMGUBQLN3 variants
VarityQ9H347
Genomic Variants (DGV)UBQLN3 [DGVbeta]
DECIPHERUBQLN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBQLN3 
Mutations
ICGC Data PortalUBQLN3 
TCGA Data PortalUBQLN3 
Broad Tumor PortalUBQLN3
OASIS PortalUBQLN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBQLN3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBQLN3
Mutations and Diseases : HGMDUBQLN3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUBQLN3
DgiDB (Drug Gene Interaction Database)UBQLN3
DoCM (Curated mutations)UBQLN3
CIViC (Clinical Interpretations of Variants in Cancer)UBQLN3
Cancer3DUBQLN3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605473   
Orphanet
DisGeNETUBQLN3
MedgenUBQLN3
Genetic Testing Registry UBQLN3
NextProtQ9H347 [Medical]
GENETestsUBQLN3
Target ValidationUBQLN3
Huge Navigator UBQLN3 [HugePedia]
ClinGenUBQLN3
Clinical trials, drugs, therapy
MyCancerGenomeUBQLN3
Protein Interactions : CTDUBQLN3
Pharm GKB GenePA37157
PharosQ9H347
Clinical trialUBQLN3
Miscellaneous
canSAR (ICR)UBQLN3
HarmonizomeUBQLN3
DataMed IndexUBQLN3
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUBQLN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:45 CEST 2021

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