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UBQLN4 (ubiquilin 4)

Identity

Alias_namesC1orf6
chromosome 1 open reading frame 6
Alias_symbol (synonym)A1U
UBIN
Other aliasA1Up
CIP75
HGNC (Hugo) UBQLN4
LocusID (NCBI) 56893
Atlas_Id 54746
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156035294 and ends at 156053825 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GAPDH (12p13.31) / UBQLN4 (1q22)STT3A (11q24.2) / UBQLN4 (1q22)UBQLN4 (1q22) / ITPR3 (6p21.31)
ZSWIM4 (19p13.13) / UBQLN4 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0119q22p13ID104284


External links

Nomenclature
HGNC (Hugo)UBQLN4   1237
Cards
Entrez_Gene (NCBI)UBQLN4  56893  ubiquilin 4
AliasesA1U; A1Up; C1orf6; CIP75; 
UBIN
GeneCards (Weizmann)UBQLN4
Ensembl hg19 (Hinxton)ENSG00000160803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160803 [Gene_View]  ENSG00000160803 [Sequence]  chr1:156035294-156053825 [Contig_View]  UBQLN4 [Vega]
ICGC DataPortalENSG00000160803
TCGA cBioPortalUBQLN4
AceView (NCBI)UBQLN4
Genatlas (Paris)UBQLN4
WikiGenes56893
SOURCE (Princeton)UBQLN4
Genetics Home Reference (NIH)UBQLN4
Genomic and cartography
GoldenPath hg38 (UCSC)UBQLN4  -     chr1:156035294-156053825 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBQLN4  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathUBQLN4 - 1q22 [CytoView hg19]  UBQLN4 - 1q22 [CytoView hg38]
ImmunoBaseENSG00000160803
Mapping of homologs : NCBIUBQLN4 [Mapview hg19]  UBQLN4 [Mapview hg38]
OMIM605440   
Gene and transcription
Genbank (Entrez)AB209566 AF113544 AF188240 AI074831 AK098368
RefSeq transcript (Entrez)NM_001304342 NM_020131
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBQLN4
Alternative Splicing GalleryENSG00000160803
Gene ExpressionUBQLN4 [ NCBI-GEO ]   UBQLN4 [ EBI - ARRAY_EXPRESS ]   UBQLN4 [ SEEK ]   UBQLN4 [ MEM ]
Gene Expression Viewer (FireBrowse)UBQLN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)56893
GTEX Portal (Tissue expression)UBQLN4
Human Protein AtlasENSG00000160803-UBQLN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBQLN4
DMDM Disease mutations56893
Blocks (Seattle)UBQLN4
Human Protein Atlas [tissue]ENSG00000160803-UBQLN4 [tissue]
HPRD05670
IPIIPI00024502   IPI00477826   IPI00744359   
Protein Interaction databases
FunCoupENSG00000160803
BioGRIDUBQLN4
STRING (EMBL)UBQLN4
ZODIACUBQLN4
Ontologies - Pathways
Huge Navigator UBQLN4 [HugePedia]
snp3D : Map Gene to Disease56893
BioCentury BCIQUBQLN4
ClinGenUBQLN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56893
Chemical/Pharm GKB GenePA25619
Clinical trialUBQLN4
Miscellaneous
canSAR (ICR)UBQLN4 (select the gene name)
DataMed IndexUBQLN4
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBQLN4
EVEXUBQLN4
GoPubMedUBQLN4
iHOPUBQLN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:15:20 CET 2020

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