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UBQLNL (ubiquilin-like)

Identity

Alias_symbol (synonym)MGC20470
MGC26958
Other alias-
HGNC (Hugo) UBQLNL
LocusID (NCBI) 143630
Atlas_Id 75439
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5514393 and ends at 5516726 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBQLNL   28294
Cards
Entrez_Gene (NCBI)UBQLNL  143630  ubiquilin-like
Aliases
GeneCards (Weizmann)UBQLNL
Ensembl hg19 (Hinxton)ENSG00000175518 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175518 [Gene_View]  chr11:5514393-5516726 [Contig_View]  UBQLNL [Vega]
ICGC DataPortalENSG00000175518
TCGA cBioPortalUBQLNL
AceView (NCBI)UBQLNL
Genatlas (Paris)UBQLNL
WikiGenes143630
SOURCE (Princeton)UBQLNL
Genetics Home Reference (NIH)UBQLNL
Genomic and cartography
GoldenPath hg38 (UCSC)UBQLNL  -     chr11:5514393-5516726 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBQLNL  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblUBQLNL - 11p15.4 [CytoView hg19]  UBQLNL - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIUBQLNL [Mapview hg19]  UBQLNL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057255 BC012183 BC034977
RefSeq transcript (Entrez)NM_145053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBQLNL
Cluster EST : UnigeneHs.10688 [ NCBI ]
CGAP (NCI)Hs.10688
Alternative Splicing GalleryENSG00000175518
Gene ExpressionUBQLNL [ NCBI-GEO ]   UBQLNL [ EBI - ARRAY_EXPRESS ]   UBQLNL [ SEEK ]   UBQLNL [ MEM ]
Gene Expression Viewer (FireBrowse)UBQLNL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143630
GTEX Portal (Tissue expression)UBQLNL
Human Protein AtlasENSG00000175518-UBQLNL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYU4
Splice isoforms : SwissVarQ8IYU4
PhosPhoSitePlusQ8IYU4
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquilin    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBQLNL
DMDM Disease mutations143630
Blocks (Seattle)UBQLNL
SuperfamilyQ8IYU4
Human Protein Atlas [tissue]ENSG00000175518-UBQLNL [tissue]
Peptide AtlasQ8IYU4
HPRD14472
IPIIPI00328301   IPI00869097   IPI01018970   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYU4
IntAct (EBI)Q8IYU4
FunCoupENSG00000175518
BioGRIDUBQLNL
STRING (EMBL)UBQLNL
ZODIACUBQLNL
Ontologies - Pathways
QuickGOQ8IYU4
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkUBQLNL
Atlas of Cancer Signalling NetworkUBQLNL
Wikipedia pathwaysUBQLNL
Orthology - Evolution
OrthoDB143630
GeneTree (enSembl)ENSG00000175518
Phylogenetic Trees/Animal Genes : TreeFamUBQLNL
HOVERGENQ8IYU4
HOGENOMQ8IYU4
Homologs : HomoloGeneUBQLNL
Homology/Alignments : Family Browser (UCSC)UBQLNL
Gene fusions - Rearrangements
Fusion: Tumor Portal UBQLNL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBQLNL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBQLNL
dbVarUBQLNL
ClinVarUBQLNL
1000_GenomesUBQLNL 
Exome Variant ServerUBQLNL
ExAC (Exome Aggregation Consortium)ENSG00000175518
GNOMAD BrowserENSG00000175518
Genetic variants : HAPMAP143630
Genomic Variants (DGV)UBQLNL [DGVbeta]
DECIPHERUBQLNL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBQLNL 
Mutations
ICGC Data PortalUBQLNL 
TCGA Data PortalUBQLNL 
Broad Tumor PortalUBQLNL
OASIS PortalUBQLNL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBQLNL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBQLNL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBQLNL
DgiDB (Drug Gene Interaction Database)UBQLNL
DoCM (Curated mutations)UBQLNL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBQLNL (select a term)
intoGenUBQLNL
Cancer3DUBQLNL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUBQLNL
Genetic Testing Registry UBQLNL
NextProtQ8IYU4 [Medical]
TSGene143630
GENETestsUBQLNL
Target ValidationUBQLNL
Huge Navigator UBQLNL [HugePedia]
snp3D : Map Gene to Disease143630
BioCentury BCIQUBQLNL
ClinGenUBQLNL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143630
Chemical/Pharm GKB GenePA162407912
Clinical trialUBQLNL
Miscellaneous
canSAR (ICR)UBQLNL (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBQLNL
EVEXUBQLNL
GoPubMedUBQLNL
iHOPUBQLNL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:54 CET 2017

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