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UBR4 (ubiquitin protein ligase E3 component n-recognin 4)

Identity

Alias (NCBI)RBAF600
ZUBR1
p600
HGNC (Hugo) UBR4
HGNC Alias symbKIAA1307
KIAA0462
RBAF600
p600
HGNC Previous nameZUBR1
HGNC Previous namezinc finger, UBR1 type 1
LocusID (NCBI) 23352
Atlas_Id 47181
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 19074511 and ends at 19210266 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPZB (1p36.13) / UBR4 (1p36.13)CYFIP1 (15q11.2) / UBR4 (1p36.13)DSCAML1 (11q23.3) / UBR4 (1p36.13)
DYNC1H1 (14q32.31) / UBR4 (1p36.13)IFFO2 (1p36.13) / UBR4 (1p36.13)PCBP2 (12q13.13) / UBR4 (1p36.13)
PDIA4 (7q36.1) / UBR4 (1p36.13)PPIE (1p34.2) / UBR4 (1p36.13)UBR4 (1p36.13) / ATP13A2 (1p36.13)
UBR4 (1p36.13) / CAPZB (1p36.13)UBR4 (1p36.13) / CDKN1A (6p21.2)UBR4 (1p36.13) / FOXK1 (7p22.1)
UBR4 (1p36.13) / GLB1 (3p22.3)UBR4 (1p36.13) / HSPG2 (1p36.12)UBR4 (1p36.13) / KDM4B (19p13.3)
UBR4 (1p36.13) / MICAL1 (6q21)UBR4 (1p36.13) / NRP1 (10p11.22)UBR4 (1p36.13) / PAX7 (1p36.13)
UBR4 (1p36.13) / UBR4 (1p36.13)UBR4 (1p36.13) / ZFP37 (9q32)USP15 (12q14.1) / UBR4 (1p36.13)
IFFO2 1p36.13 / UBR4 1p36.13UBR4 1p36.13 / HSPG2 1p36.12UBR4 1p36.13 / PAX7 1p36.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;9)(p36;q32) UBR4/ZFP37


External links

Nomenclature
HGNC (Hugo)UBR4   30313
Cards
Entrez_Gene (NCBI)UBR4    ubiquitin protein ligase E3 component n-recognin 4
AliasesRBAF600; ZUBR1; p600
GeneCards (Weizmann)UBR4
Ensembl hg19 (Hinxton)ENSG00000127481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127481 [Gene_View]  ENSG00000127481 [Sequence]  chr1:19074511-19210266 [Contig_View]  UBR4 [Vega]
ICGC DataPortalENSG00000127481
TCGA cBioPortalUBR4
AceView (NCBI)UBR4
Genatlas (Paris)UBR4
SOURCE (Princeton)UBR4
Genetics Home Reference (NIH)UBR4
Genomic and cartography
GoldenPath hg38 (UCSC)UBR4  -     chr1:19074511-19210266 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBR4  -     1p36.13   [Description]    (hg19-Feb_2009)
GoldenPathUBR4 - 1p36.13 [CytoView hg19]  UBR4 - 1p36.13 [CytoView hg38]
ImmunoBaseENSG00000127481
Genome Data Viewer NCBIUBR4 [Mapview hg19]  
OMIM609890   
Gene and transcription
Genbank (Entrez)AA748129 AB007931 AB037728 AF055010 AF348492
RefSeq transcript (Entrez)NM_020765
Consensus coding sequences : CCDS (NCBI)UBR4
Gene ExpressionUBR4 [ NCBI-GEO ]   UBR4 [ EBI - ARRAY_EXPRESS ]   UBR4 [ SEEK ]   UBR4 [ MEM ]
Gene Expression Viewer (FireBrowse)UBR4 [ Firebrowse - Broad ]
GenevisibleExpression of UBR4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23352
GTEX Portal (Tissue expression)UBR4
Human Protein AtlasENSG00000127481-UBR4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBR4
Human Protein Atlas [tissue]ENSG00000127481-UBR4 [tissue]
HPRD10184
Protein Interaction databases
BioGRIDUBR4
STRING (EMBL)UBR4
ZODIACUBR4
Ontologies - Pathways
Litterature
PubMed106 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUBR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:15 CEST 2021

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