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UBR7 (ubiquitin protein ligase E3 component n-recognin 7 (putative))

Identity

Alias_namesC14orf130
chromosome 14 open reading frame 130
Other alias
HGNC (Hugo) UBR7
LocusID (NCBI) 55148
Atlas_Id 75441
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 93207056 and ends at 93229215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BTBD7 (14q32.12) / UBR7 (14q32.12)NELL2 (12q12) / UBR7 (14q32.12)TMEM251 (14q32.12) / UBR7 (14q32.12)
UBR7 (14q32.12) / BTBD7 (14q32.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBR7   20344
Cards
Entrez_Gene (NCBI)UBR7  55148  ubiquitin protein ligase E3 component n-recognin 7 (putative)
AliasesC14orf130
GeneCards (Weizmann)UBR7
Ensembl hg19 (Hinxton)ENSG00000012963 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000012963 [Gene_View]  chr14:93207056-93229215 [Contig_View]  UBR7 [Vega]
ICGC DataPortalENSG00000012963
TCGA cBioPortalUBR7
AceView (NCBI)UBR7
Genatlas (Paris)UBR7
WikiGenes55148
SOURCE (Princeton)UBR7
Genetics Home Reference (NIH)UBR7
Genomic and cartography
GoldenPath hg38 (UCSC)UBR7  -     chr14:93207056-93229215 +  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBR7  -     14q32.12   [Description]    (hg19-Feb_2009)
EnsemblUBR7 - 14q32.12 [CytoView hg19]  UBR7 - 14q32.12 [CytoView hg38]
Mapping of homologs : NCBIUBR7 [Mapview hg19]  UBR7 [Mapview hg38]
OMIM613816   
Gene and transcription
Genbank (Entrez)AK001345 AK097477 AK315492 BC015046 BC017013
RefSeq transcript (Entrez)NM_001100417 NM_175748
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_051089 NT_187601
Consensus coding sequences : CCDS (NCBI)UBR7
Cluster EST : UnigeneHs.648806 [ NCBI ]
CGAP (NCI)Hs.648806
Alternative Splicing GalleryENSG00000012963
Gene ExpressionUBR7 [ NCBI-GEO ]   UBR7 [ EBI - ARRAY_EXPRESS ]   UBR7 [ SEEK ]   UBR7 [ MEM ]
Gene Expression Viewer (FireBrowse)UBR7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55148
GTEX Portal (Tissue expression)UBR7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N806   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N806  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N806
Splice isoforms : SwissVarQ8N806
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8N806
Domaine pattern : Prosite (Expaxy)ZF_UBR (PS51157)   
Domains : Interpro (EBI)Znf_FYVE_PHD    Znf_RING/FYVE/PHD    Znf_UBR   
Domain families : Pfam (Sanger)zf-UBR (PF02207)   
Domain families : Pfam (NCBI)pfam02207   
Domain families : Smart (EMBL)ZnF_UBR1 (SM00396)  
Conserved Domain (NCBI)UBR7
DMDM Disease mutations55148
Blocks (Seattle)UBR7
SuperfamilyQ8N806
Human Protein AtlasENSG00000012963
Peptide AtlasQ8N806
HPRD16602
IPIIPI00221172   IPI01010263   IPI00181504   IPI01024928   IPI01024809   IPI01025653   IPI01025549   IPI01025392   IPI01025261   
Protein Interaction databases
DIP (DOE-UCLA)Q8N806
IntAct (EBI)Q8N806
FunCoupENSG00000012963
BioGRIDUBR7
STRING (EMBL)UBR7
ZODIACUBR7
Ontologies - Pathways
QuickGOQ8N806
Ontology : AmiGOmolecular_function  biological_process  zinc ion binding  protein ubiquitination  transferase activity  
Ontology : EGO-EBImolecular_function  biological_process  zinc ion binding  protein ubiquitination  transferase activity  
NDEx NetworkUBR7
Atlas of Cancer Signalling NetworkUBR7
Wikipedia pathwaysUBR7
Orthology - Evolution
OrthoDB55148
GeneTree (enSembl)ENSG00000012963
Phylogenetic Trees/Animal Genes : TreeFamUBR7
HOVERGENQ8N806
HOGENOMQ8N806
Homologs : HomoloGeneUBR7
Homology/Alignments : Family Browser (UCSC)UBR7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBR7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBR7
dbVarUBR7
ClinVarUBR7
1000_GenomesUBR7 
Exome Variant ServerUBR7
ExAC (Exome Aggregation Consortium)UBR7 (select the gene name)
Genetic variants : HAPMAP55148
Genomic Variants (DGV)UBR7 [DGVbeta]
DECIPHERUBR7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBR7 
Mutations
ICGC Data PortalUBR7 
TCGA Data PortalUBR7 
Broad Tumor PortalUBR7
OASIS PortalUBR7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBR7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBR7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBR7
DgiDB (Drug Gene Interaction Database)UBR7
DoCM (Curated mutations)UBR7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBR7 (select a term)
intoGenUBR7
Cancer3DUBR7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613816   
Orphanet
MedgenUBR7
Genetic Testing Registry UBR7
NextProtQ8N806 [Medical]
TSGene55148
GENETestsUBR7
Target ValidationUBR7
Huge Navigator UBR7 [HugePedia]
snp3D : Map Gene to Disease55148
BioCentury BCIQUBR7
ClinGenUBR7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55148
Chemical/Pharm GKB GenePA162408298
Clinical trialUBR7
Miscellaneous
canSAR (ICR)UBR7 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBR7
EVEXUBR7
GoPubMedUBR7
iHOPUBR7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:04 CEST 2017

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