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UBTD1 (ubiquitin domain containing 1)

Identity

Alias_symbol (synonym)FLJ11807
Other alias-
HGNC (Hugo) UBTD1
LocusID (NCBI) 80019
Atlas_Id 55229
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 97498882 and ends at 97571210 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX39B (6p21.33) / UBTD1 (10q24.1)ZFYVE1 (14q24.2) / UBTD1 (10q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBTD1   25683
Cards
Entrez_Gene (NCBI)UBTD1  80019  ubiquitin domain containing 1
Aliases
GeneCards (Weizmann)UBTD1
Ensembl hg19 (Hinxton)ENSG00000165886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165886 [Gene_View]  chr10:97498882-97571210 [Contig_View]  UBTD1 [Vega]
ICGC DataPortalENSG00000165886
TCGA cBioPortalUBTD1
AceView (NCBI)UBTD1
Genatlas (Paris)UBTD1
WikiGenes80019
SOURCE (Princeton)UBTD1
Genetics Home Reference (NIH)UBTD1
Genomic and cartography
GoldenPath hg38 (UCSC)UBTD1  -     chr10:97498882-97571210 +  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBTD1  -     10q24.1   [Description]    (hg19-Feb_2009)
EnsemblUBTD1 - 10q24.1 [CytoView hg19]  UBTD1 - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBIUBTD1 [Mapview hg19]  UBTD1 [Mapview hg38]
OMIM616388   
Gene and transcription
Genbank (Entrez)AK021869 AK222597 BC007331 BM922594 CB306542
RefSeq transcript (Entrez)NM_024954
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBTD1
Cluster EST : UnigeneHs.500724 [ NCBI ]
CGAP (NCI)Hs.500724
Alternative Splicing GalleryENSG00000165886
Gene ExpressionUBTD1 [ NCBI-GEO ]   UBTD1 [ EBI - ARRAY_EXPRESS ]   UBTD1 [ SEEK ]   UBTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80019
GTEX Portal (Tissue expression)UBTD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAC8
Splice isoforms : SwissVarQ9HAC8
PhosPhoSitePlusQ9HAC8
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)UBD    Ubiquitin    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)UBD (PF16455)    ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam16455    pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBTD1
DMDM Disease mutations80019
Blocks (Seattle)UBTD1
SuperfamilyQ9HAC8
Human Protein AtlasENSG00000165886
Peptide AtlasQ9HAC8
HPRD08568
IPIIPI00017227   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAC8
IntAct (EBI)Q9HAC8
FunCoupENSG00000165886
BioGRIDUBTD1
STRING (EMBL)UBTD1
ZODIACUBTD1
Ontologies - Pathways
QuickGOQ9HAC8
Ontology : AmiGOprotein binding  ubiquitin binding  
Ontology : EGO-EBIprotein binding  ubiquitin binding  
NDEx NetworkUBTD1
Atlas of Cancer Signalling NetworkUBTD1
Wikipedia pathwaysUBTD1
Orthology - Evolution
OrthoDB80019
GeneTree (enSembl)ENSG00000165886
Phylogenetic Trees/Animal Genes : TreeFamUBTD1
HOVERGENQ9HAC8
HOGENOMQ9HAC8
Homologs : HomoloGeneUBTD1
Homology/Alignments : Family Browser (UCSC)UBTD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBTD1
dbVarUBTD1
ClinVarUBTD1
1000_GenomesUBTD1 
Exome Variant ServerUBTD1
ExAC (Exome Aggregation Consortium)UBTD1 (select the gene name)
Genetic variants : HAPMAP80019
Genomic Variants (DGV)UBTD1 [DGVbeta]
DECIPHERUBTD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBTD1 
Mutations
ICGC Data PortalUBTD1 
TCGA Data PortalUBTD1 
Broad Tumor PortalUBTD1
OASIS PortalUBTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBTD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBTD1
DgiDB (Drug Gene Interaction Database)UBTD1
DoCM (Curated mutations)UBTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBTD1 (select a term)
intoGenUBTD1
Cancer3DUBTD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616388   
Orphanet
MedgenUBTD1
Genetic Testing Registry UBTD1
NextProtQ9HAC8 [Medical]
TSGene80019
GENETestsUBTD1
Target ValidationUBTD1
Huge Navigator UBTD1 [HugePedia]
snp3D : Map Gene to Disease80019
BioCentury BCIQUBTD1
ClinGenUBTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80019
Chemical/Pharm GKB GenePA134976337
Clinical trialUBTD1
Miscellaneous
canSAR (ICR)UBTD1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBTD1
EVEXUBTD1
GoPubMedUBTD1
iHOPUBTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:45 CEST 2017

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