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UBTD1 (ubiquitin domain containing 1)

Identity

Alias (NCBI)-
HGNC (Hugo) UBTD1
HGNC Alias symbFLJ11807
LocusID (NCBI) 80019
Atlas_Id 55229
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 97498924 and ends at 97571206 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX39B (6p21.33) / UBTD1 (10q24.1)ZFYVE1 (14q24.2) / UBTD1 (10q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UBTD1   25683
Cards
Entrez_Gene (NCBI)UBTD1    ubiquitin domain containing 1
Aliases
GeneCards (Weizmann)UBTD1
Ensembl hg19 (Hinxton)ENSG00000165886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165886 [Gene_View]  ENSG00000165886 [Sequence]  chr10:97498924-97571206 [Contig_View]  UBTD1 [Vega]
ICGC DataPortalENSG00000165886
TCGA cBioPortalUBTD1
AceView (NCBI)UBTD1
Genatlas (Paris)UBTD1
SOURCE (Princeton)UBTD1
Genetics Home Reference (NIH)UBTD1
Genomic and cartography
GoldenPath hg38 (UCSC)UBTD1  -     chr10:97498924-97571206 +  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBTD1  -     10q24.1   [Description]    (hg19-Feb_2009)
GoldenPathUBTD1 - 10q24.1 [CytoView hg19]  UBTD1 - 10q24.1 [CytoView hg38]
ImmunoBaseENSG00000165886
Genome Data Viewer NCBIUBTD1 [Mapview hg19]  
OMIM616388   
Gene and transcription
Genbank (Entrez)AK021869 AK222597 BC007331 BM922594 CB306542
RefSeq transcript (Entrez)NM_024954
Consensus coding sequences : CCDS (NCBI)UBTD1
Gene ExpressionUBTD1 [ NCBI-GEO ]   UBTD1 [ EBI - ARRAY_EXPRESS ]   UBTD1 [ SEEK ]   UBTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBTD1 [ Firebrowse - Broad ]
GenevisibleExpression of UBTD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80019
GTEX Portal (Tissue expression)UBTD1
Human Protein AtlasENSG00000165886-UBTD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAC8
PhosPhoSitePlusQ9HAC8
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)DC-UbP/UBTD2_N    DC-UbP/UBTD2_N_sf    Ubiquitin-like_dom    Ubiquitin-like_domsf    Ubiquitin_dom    UBTD1/2   
Domain families : Pfam (Sanger)UBD (PF16455)    ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam16455    pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)UBTD1
SuperfamilyQ9HAC8
AlphaFold pdb e-kbQ9HAC8   
Human Protein Atlas [tissue]ENSG00000165886-UBTD1 [tissue]
HPRD08568
Protein Interaction databases
DIP (DOE-UCLA)Q9HAC8
IntAct (EBI)Q9HAC8
BioGRIDUBTD1
STRING (EMBL)UBTD1
ZODIACUBTD1
Ontologies - Pathways
QuickGOQ9HAC8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkUBTD1
Atlas of Cancer Signalling NetworkUBTD1
Wikipedia pathwaysUBTD1
Orthology - Evolution
OrthoDB80019
GeneTree (enSembl)ENSG00000165886
Phylogenetic Trees/Animal Genes : TreeFamUBTD1
Homologs : HomoloGeneUBTD1
Homology/Alignments : Family Browser (UCSC)UBTD1
Gene fusions - Rearrangements
Fusion : QuiverUBTD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBTD1
dbVarUBTD1
ClinVarUBTD1
MonarchUBTD1
1000_GenomesUBTD1 
Exome Variant ServerUBTD1
GNOMAD BrowserENSG00000165886
Varsome BrowserUBTD1
ACMGUBTD1 variants
VarityQ9HAC8
Genomic Variants (DGV)UBTD1 [DGVbeta]
DECIPHERUBTD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBTD1 
Mutations
ICGC Data PortalUBTD1 
TCGA Data PortalUBTD1 
Broad Tumor PortalUBTD1
OASIS PortalUBTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBTD1
Mutations and Diseases : HGMDUBTD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUBTD1
DgiDB (Drug Gene Interaction Database)UBTD1
DoCM (Curated mutations)UBTD1
CIViC (Clinical Interpretations of Variants in Cancer)UBTD1
Cancer3DUBTD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616388   
Orphanet
DisGeNETUBTD1
MedgenUBTD1
Genetic Testing Registry UBTD1
NextProtQ9HAC8 [Medical]
GENETestsUBTD1
Target ValidationUBTD1
Huge Navigator UBTD1 [HugePedia]
ClinGenUBTD1
Clinical trials, drugs, therapy
MyCancerGenomeUBTD1
Protein Interactions : CTDUBTD1
Pharm GKB GenePA134976337
PharosQ9HAC8
Clinical trialUBTD1
Miscellaneous
canSAR (ICR)UBTD1
HarmonizomeUBTD1
DataMed IndexUBTD1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUBTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:16 CEST 2021

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