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UBTD2 (ubiquitin domain containing 2)

Identity

Alias_symbol (synonym)DC-UbP
MGC30022
Other aliasDCUBP
HGNC (Hugo) UBTD2
LocusID (NCBI) 92181
Atlas_Id 75443
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 172209646 and ends at 172283791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDAN1 (15q15.2) / UBTD2 (5q35.1)KDM5C (Xp11.22) / UBTD2 (5q35.1)UBTD2 (5q35.1) / PDCD7 (15q22.31)
UBTD2 (5q35.1) / SH3PXD2B (5q35.1)UBTD2 (5q35.1) / SLC38A1 (12q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBTD2   24463
Cards
Entrez_Gene (NCBI)UBTD2  92181  ubiquitin domain containing 2
AliasesDCUBP
GeneCards (Weizmann)UBTD2
Ensembl hg19 (Hinxton)ENSG00000168246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168246 [Gene_View]  chr5:172209646-172283791 [Contig_View]  UBTD2 [Vega]
ICGC DataPortalENSG00000168246
TCGA cBioPortalUBTD2
AceView (NCBI)UBTD2
Genatlas (Paris)UBTD2
WikiGenes92181
SOURCE (Princeton)UBTD2
Genetics Home Reference (NIH)UBTD2
Genomic and cartography
GoldenPath hg38 (UCSC)UBTD2  -     chr5:172209646-172283791 -  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBTD2  -     5q35.1   [Description]    (hg19-Feb_2009)
EnsemblUBTD2 - 5q35.1 [CytoView hg19]  UBTD2 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBIUBTD2 [Mapview hg19]  UBTD2 [Mapview hg38]
OMIM610174   
Gene and transcription
Genbank (Entrez)AF251700 AK022894 AK313274 AU117374 BC019910
RefSeq transcript (Entrez)NM_152277
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBTD2
Cluster EST : UnigeneHs.131570 [ NCBI ]
CGAP (NCI)Hs.131570
Alternative Splicing GalleryENSG00000168246
Gene ExpressionUBTD2 [ NCBI-GEO ]   UBTD2 [ EBI - ARRAY_EXPRESS ]   UBTD2 [ SEEK ]   UBTD2 [ MEM ]
Gene Expression Viewer (FireBrowse)UBTD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92181
GTEX Portal (Tissue expression)UBTD2
Human Protein AtlasENSG00000168246-UBTD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUN7
Splice isoforms : SwissVarQ8WUN7
PhosPhoSitePlusQ8WUN7
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)UBD    Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)UBD (PF16455)    ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam16455    pfam00240   
Conserved Domain (NCBI)UBTD2
DMDM Disease mutations92181
Blocks (Seattle)UBTD2
PDB (SRS)1TTN    2KSN   
PDB (PDBSum)1TTN    2KSN   
PDB (IMB)1TTN    2KSN   
PDB (RSDB)1TTN    2KSN   
Structural Biology KnowledgeBase1TTN    2KSN   
SCOP (Structural Classification of Proteins)1TTN    2KSN   
CATH (Classification of proteins structures)1TTN    2KSN   
SuperfamilyQ8WUN7
Human Protein Atlas [tissue]ENSG00000168246-UBTD2 [tissue]
Peptide AtlasQ8WUN7
HPRD13118
IPIIPI00157729   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUN7
IntAct (EBI)Q8WUN7
FunCoupENSG00000168246
BioGRIDUBTD2
STRING (EMBL)UBTD2
ZODIACUBTD2
Ontologies - Pathways
QuickGOQ8WUN7
Ontology : AmiGOcytoplasm  ubiquitin binding  
Ontology : EGO-EBIcytoplasm  ubiquitin binding  
NDEx NetworkUBTD2
Atlas of Cancer Signalling NetworkUBTD2
Wikipedia pathwaysUBTD2
Orthology - Evolution
OrthoDB92181
GeneTree (enSembl)ENSG00000168246
Phylogenetic Trees/Animal Genes : TreeFamUBTD2
HOVERGENQ8WUN7
HOGENOMQ8WUN7
Homologs : HomoloGeneUBTD2
Homology/Alignments : Family Browser (UCSC)UBTD2
Gene fusions - Rearrangements
Tumor Fusion PortalUBTD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBTD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBTD2
dbVarUBTD2
ClinVarUBTD2
1000_GenomesUBTD2 
Exome Variant ServerUBTD2
ExAC (Exome Aggregation Consortium)ENSG00000168246
GNOMAD BrowserENSG00000168246
Genetic variants : HAPMAP92181
Genomic Variants (DGV)UBTD2 [DGVbeta]
DECIPHERUBTD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBTD2 
Mutations
ICGC Data PortalUBTD2 
TCGA Data PortalUBTD2 
Broad Tumor PortalUBTD2
OASIS PortalUBTD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBTD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBTD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBTD2
DgiDB (Drug Gene Interaction Database)UBTD2
DoCM (Curated mutations)UBTD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBTD2 (select a term)
intoGenUBTD2
Cancer3DUBTD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610174   
Orphanet
DisGeNETUBTD2
MedgenUBTD2
Genetic Testing Registry UBTD2
NextProtQ8WUN7 [Medical]
TSGene92181
GENETestsUBTD2
Target ValidationUBTD2
Huge Navigator UBTD2 [HugePedia]
snp3D : Map Gene to Disease92181
BioCentury BCIQUBTD2
ClinGenUBTD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92181
Chemical/Pharm GKB GenePA162408325
Clinical trialUBTD2
Miscellaneous
canSAR (ICR)UBTD2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBTD2
EVEXUBTD2
GoPubMedUBTD2
iHOPUBTD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:20:48 CET 2017

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