Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UBTF (upstream binding transcription factor, RNA polymerase I)

Identity

Other namesNOR-90
UBF
UBF-1
UBF1
HGNC (Hugo) UBTF
LocusID (NCBI) 7343
Location 17q21.31
Location_base_pair Starts at 42282401 and ends at 42298250 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UBTF   12511
Entrez_Gene (NCBI)UBTF  7343  upstream binding transcription factor, RNA polymerase I
Cards
GeneCards (Weizmann)UBTF
Ensembl (Hinxton)ENSG00000108312 [Gene_View]  chr17:42282401-42298250 [Contig_View]  UBTF [Vega]
AceView (NCBI)UBTF
Genatlas (Paris)UBTF
SOURCE (Stanford)NM_001076683 NM_001076684 NM_014233
Genomic and cartography
GoldenPath (UCSC)UBTF  -  17q21.31   chr17:42282401-42298250 -  17q21.31   [Description]    (hg19-Feb_2009)
EnsemblUBTF - 17q21.31 [CytoView]
Mapping of homologs : NCBIUBTF [Mapview]
OMIM600673   
Gene and transcription
Genbank (Entrez)AF289595 AK291733 AK292518 AK292577 AK296917
RefSeq transcript (SRS)NM_001076683 NM_001076684 NM_014233
RefSeq transcript (Entrez)NM_001076683 NM_001076684 NM_014233
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NG_029864 NT_010783 NW_001838437 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_029864 NT_010783 NW_001838437 NW_004078092
Consensus coding sequences : CCDS (NCBI)UBTF
Cluster EST : UnigeneHs.89781 [ SRS ] Hs.89781 [ NCBI ]
CGAP (NCI)Hs.89781
Alternative Splicing : Fast-db (Paris)GSHG0013457
Alternative Splicing GalleryENSG00000108312
Gene ExpressionUBTF [ NCBI-GEO ]   UBTF [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17480 (SRS) P17480 (Uniprot)
NextProtP17480
With graphics : InterProP17480
Splice isoforms : SwissVarP17480(Swissvar)
Domaine pattern : Prosite (SRS)HMG_BOX_2 (PS50118)   
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (SRS)HMG_superfamily   
Domains : Interpro (EBI)HMG_superfamily   
Related proteins : CluSTrP17480
Domain families : Pfam (SRS)DUF1898 (PF09011)    HMG_box (PF00505)   
Domain families : Pfam (Sanger)DUF1898 (PF09011)    HMG_box (PF00505)   
Domain families : Pfam (NCBI)pfam09011    pfam00505   
Domain families : Smart (EMBL)HMG (SM00398)  
DMDM7343
Blocks (Seattle)P17480
PDB (SRS)1K99    1L8Y    1L8Z    2HDZ   
PDB (PDBSum)1K99    1L8Y    1L8Z    2HDZ   
PDB (IMB)1K99    1L8Y    1L8Z    2HDZ   
PDB (RSDB)1K99    1L8Y    1L8Z    2HDZ   
Human Protein AtlasENSG00000108312
HPRD02814
IPIIPI00014533   IPI00220833   IPI00384556   IPI00979003   IPI00976760   IPI00981097   IPI00979797   
Protein Interaction databases
DIP (DOE-UCLA)P17480
IntAct (EBI)P17480
FunCoupENSG00000108312
REACTOMEUBTF
Protein Interaction Database7343
BioGRIDUBTF
InParanoidP17480
Interologous Interaction database P17480
IntegromeDBUBTF
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)UBTF
SNP (GeneSNP Utah)UBTF
SNP : HGBaseUBTF
Genetic variants : HAPMAPUBTF
Somatic Mutations in Cancer : COSMICUBTF 
CONAN: Copy Number AnalysisUBTF 
Mutations and Diseases : HGMDUBTF
OMIM600673   
GENETests600673   
Disease Genetic AssociationUBTF
Huge Navigator UBTF [HugePedia]  UBTF [HugeCancerGEM]
Genomic VariantsUBTF  UBTF [DGVbeta]
snp3D : Map Gene to Disease7343
General knowledge
Homologs : HomoloGeneUBTF
Homology/Alignments : Family Browser (UCSC)UBTF
Phylogenetic Trees/Animal Genes : TreeFamUBTF
Chemical/Protein Interactions : CTD7343
Chemical/Pharm GKB GenePA37158
Clinical trialUBTF
Cancer Resource (Charite)ENSG00000108312
Ontology : AmiGODNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  regulation of transcription from RNA polymerase I promoter  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  gene expression  positive regulation of transcription from RNA polymerase I promoter  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  regulation of transcription from RNA polymerase I promoter  transcription from RNA polymerase I promoter  transcription initiation from RNA polymerase I promoter  transcription elongation from RNA polymerase I promoter  termination of RNA polymerase I transcription  gene expression  positive regulation of transcription from RNA polymerase I promoter  
Other databases
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
PubGeneUBTF
iHOPUBTF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:08 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.