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UBTFL1 (upstream binding transcription factor, RNA polymerase I-like 1)

Identity

Alias_namesC11orf27
chromosome 11 open reading frame 27
Other aliasHMGPI
HGNC (Hugo) UBTFL1
LocusID (NCBI) 642623
Atlas_Id 75444
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 90085950 and ends at 90087131 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBTFL1   14533
Cards
Entrez_Gene (NCBI)UBTFL1  642623  upstream binding transcription factor, RNA polymerase I-like 1
AliasesC11orf27; HMGPI
GeneCards (Weizmann)UBTFL1
Ensembl hg19 (Hinxton)ENSG00000255009 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255009 [Gene_View]  chr11:90085950-90087131 [Contig_View]  UBTFL1 [Vega]
ICGC DataPortalENSG00000255009
TCGA cBioPortalUBTFL1
AceView (NCBI)UBTFL1
Genatlas (Paris)UBTFL1
WikiGenes642623
SOURCE (Princeton)UBTFL1
Genetics Home Reference (NIH)UBTFL1
Genomic and cartography
GoldenPath hg38 (UCSC)UBTFL1  -     chr11:90085950-90087131 +  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBTFL1  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblUBTFL1 - 11q14.3 [CytoView hg19]  UBTFL1 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBIUBTFL1 [Mapview hg19]  UBTFL1 [Mapview hg38]
OMIM613696   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001143975
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBTFL1
Cluster EST : UnigeneHs.719885 [ NCBI ]
CGAP (NCI)Hs.719885
Alternative Splicing GalleryENSG00000255009
Gene ExpressionUBTFL1 [ NCBI-GEO ]   UBTFL1 [ EBI - ARRAY_EXPRESS ]   UBTFL1 [ SEEK ]   UBTFL1 [ MEM ]
Gene Expression Viewer (FireBrowse)UBTFL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642623
GTEX Portal (Tissue expression)UBTFL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CB47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CB47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CB47
Splice isoforms : SwissVarP0CB47
PhosPhoSitePlusP0CB47
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom   
Domain families : Pfam (Sanger)HMG_box (PF00505)   
Domain families : Pfam (NCBI)pfam00505   
Domain families : Smart (EMBL)HMG (SM00398)  
Conserved Domain (NCBI)UBTFL1
DMDM Disease mutations642623
Blocks (Seattle)UBTFL1
SuperfamilyP0CB47
Human Protein AtlasENSG00000255009
Peptide AtlasP0CB47
IPIIPI00921220   
Protein Interaction databases
DIP (DOE-UCLA)P0CB47
IntAct (EBI)P0CB47
FunCoupENSG00000255009
BioGRIDUBTFL1
STRING (EMBL)UBTFL1
ZODIACUBTFL1
Ontologies - Pathways
QuickGOP0CB47
Ontology : AmiGOblastocyst growth  DNA binding  nucleus  cytoplasm  embryo implantation  regulation of gene expression  
Ontology : EGO-EBIblastocyst growth  DNA binding  nucleus  cytoplasm  embryo implantation  regulation of gene expression  
NDEx NetworkUBTFL1
Atlas of Cancer Signalling NetworkUBTFL1
Wikipedia pathwaysUBTFL1
Orthology - Evolution
OrthoDB642623
GeneTree (enSembl)ENSG00000255009
Phylogenetic Trees/Animal Genes : TreeFamUBTFL1
HOVERGENP0CB47
HOGENOMP0CB47
Homologs : HomoloGeneUBTFL1
Homology/Alignments : Family Browser (UCSC)UBTFL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBTFL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBTFL1
dbVarUBTFL1
ClinVarUBTFL1
1000_GenomesUBTFL1 
Exome Variant ServerUBTFL1
ExAC (Exome Aggregation Consortium)UBTFL1 (select the gene name)
Genetic variants : HAPMAP642623
Genomic Variants (DGV)UBTFL1 [DGVbeta]
DECIPHERUBTFL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBTFL1 
Mutations
ICGC Data PortalUBTFL1 
TCGA Data PortalUBTFL1 
Broad Tumor PortalUBTFL1
OASIS PortalUBTFL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUBTFL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBTFL1
DgiDB (Drug Gene Interaction Database)UBTFL1
DoCM (Curated mutations)UBTFL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBTFL1 (select a term)
intoGenUBTFL1
Cancer3DUBTFL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613696   
Orphanet
MedgenUBTFL1
Genetic Testing Registry UBTFL1
NextProtP0CB47 [Medical]
TSGene642623
GENETestsUBTFL1
Target ValidationUBTFL1
Huge Navigator UBTFL1 [HugePedia]
snp3D : Map Gene to Disease642623
BioCentury BCIQUBTFL1
ClinGenUBTFL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642623
Chemical/Pharm GKB GenePA164727456
Clinical trialUBTFL1
Miscellaneous
canSAR (ICR)UBTFL1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBTFL1
EVEXUBTFL1
GoPubMedUBTFL1
iHOPUBTFL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:11 CEST 2017

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