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UBXN10 (UBX domain protein 10)

Identity

Alias_namesUBXD3
UBX domain containing 3
Alias_symbol (synonym)FLJ25429
Other alias
HGNC (Hugo) UBXN10
LocusID (NCBI) 127733
Atlas_Id 75446
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 20186078 and ends at 20196048 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBXN10   26354
Cards
Entrez_Gene (NCBI)UBXN10  127733  UBX domain protein 10
AliasesUBXD3
GeneCards (Weizmann)UBXN10
Ensembl hg19 (Hinxton)ENSG00000162543 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162543 [Gene_View]  chr1:20186078-20196048 [Contig_View]  UBXN10 [Vega]
ICGC DataPortalENSG00000162543
TCGA cBioPortalUBXN10
AceView (NCBI)UBXN10
Genatlas (Paris)UBXN10
WikiGenes127733
SOURCE (Princeton)UBXN10
Genetics Home Reference (NIH)UBXN10
Genomic and cartography
GoldenPath hg38 (UCSC)UBXN10  -     chr1:20186078-20196048 +  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBXN10  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblUBXN10 - 1p36.12 [CytoView hg19]  UBXN10 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIUBXN10 [Mapview hg19]  UBXN10 [Mapview hg38]
OMIM616783   
Gene and transcription
Genbank (Entrez)AK058158 BC036417 BC047428 BX648631 DB061550
RefSeq transcript (Entrez)NM_152376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBXN10
Cluster EST : UnigeneHs.432503 [ NCBI ]
CGAP (NCI)Hs.432503
Alternative Splicing GalleryENSG00000162543
Gene ExpressionUBXN10 [ NCBI-GEO ]   UBXN10 [ EBI - ARRAY_EXPRESS ]   UBXN10 [ SEEK ]   UBXN10 [ MEM ]
Gene Expression Viewer (FireBrowse)UBXN10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127733
GTEX Portal (Tissue expression)UBXN10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LJ8
Splice isoforms : SwissVarQ96LJ8
PhosPhoSitePlusQ96LJ8
Domaine pattern : Prosite (Expaxy)UBX (PS50033)   
Domains : Interpro (EBI)Ubiquitin-rel_dom    UBX_dom   
Domain families : Pfam (Sanger)UBX (PF00789)   
Domain families : Pfam (NCBI)pfam00789   
Domain families : Smart (EMBL)UBX (SM00166)  
Conserved Domain (NCBI)UBXN10
DMDM Disease mutations127733
Blocks (Seattle)UBXN10
SuperfamilyQ96LJ8
Human Protein AtlasENSG00000162543
Peptide AtlasQ96LJ8
HPRD18255
IPIIPI00065064   
Protein Interaction databases
DIP (DOE-UCLA)Q96LJ8
IntAct (EBI)Q96LJ8
FunCoupENSG00000162543
BioGRIDUBXN10
STRING (EMBL)UBXN10
ZODIACUBXN10
Ontologies - Pathways
QuickGOQ96LJ8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUBXN10
Atlas of Cancer Signalling NetworkUBXN10
Wikipedia pathwaysUBXN10
Orthology - Evolution
OrthoDB127733
GeneTree (enSembl)ENSG00000162543
Phylogenetic Trees/Animal Genes : TreeFamUBXN10
HOVERGENQ96LJ8
HOGENOMQ96LJ8
Homologs : HomoloGeneUBXN10
Homology/Alignments : Family Browser (UCSC)UBXN10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBXN10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBXN10
dbVarUBXN10
ClinVarUBXN10
1000_GenomesUBXN10 
Exome Variant ServerUBXN10
ExAC (Exome Aggregation Consortium)UBXN10 (select the gene name)
Genetic variants : HAPMAP127733
Genomic Variants (DGV)UBXN10 [DGVbeta]
DECIPHERUBXN10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBXN10 
Mutations
ICGC Data PortalUBXN10 
TCGA Data PortalUBXN10 
Broad Tumor PortalUBXN10
OASIS PortalUBXN10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBXN10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBXN10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBXN10
DgiDB (Drug Gene Interaction Database)UBXN10
DoCM (Curated mutations)UBXN10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBXN10 (select a term)
intoGenUBXN10
Cancer3DUBXN10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616783   
Orphanet
MedgenUBXN10
Genetic Testing Registry UBXN10
NextProtQ96LJ8 [Medical]
TSGene127733
GENETestsUBXN10
Target ValidationUBXN10
Huge Navigator UBXN10 [HugePedia]
snp3D : Map Gene to Disease127733
BioCentury BCIQUBXN10
ClinGenUBXN10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127733
Chemical/Pharm GKB GenePA162408337
Clinical trialUBXN10
Miscellaneous
canSAR (ICR)UBXN10 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBXN10
EVEXUBXN10
GoPubMedUBXN10
iHOPUBXN10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:05 CEST 2017

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