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UBXN11 (UBX domain protein 11)

Identity

Alias_namesUBXD5
UBX domain containing 5
Alias_symbol (synonym)SOC
SOCI
Other aliasCOA-1
PP2243
HGNC (Hugo) UBXN11
LocusID (NCBI) 91544
Atlas_Id 50644
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26282282 and ends at 26306704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EGR3 (8p21.3) / UBXN11 (1p36.11)SLC5A3 (21q22.11) / UBXN11 (1p36.11)UBXN11 (1p36.11) / CDS2 (20p12.3)
UBXN11 (1p36.11) / UBXN11 (1p36.11)UGCG (9q31.3) / UBXN11 (1p36.11)UGCG 9q31.3 / UBXN11 1p36.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBXN11   30600
Cards
Entrez_Gene (NCBI)UBXN11  91544  UBX domain protein 11
AliasesCOA-1; PP2243; SOC; SOCI; 
UBXD5
GeneCards (Weizmann)UBXN11
Ensembl hg19 (Hinxton)ENSG00000158062 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158062 [Gene_View]  chr1:26282282-26306704 [Contig_View]  UBXN11 [Vega]
ICGC DataPortalENSG00000158062
TCGA cBioPortalUBXN11
AceView (NCBI)UBXN11
Genatlas (Paris)UBXN11
WikiGenes91544
SOURCE (Princeton)UBXN11
Genetics Home Reference (NIH)UBXN11
Genomic and cartography
GoldenPath hg38 (UCSC)UBXN11  -     chr1:26282282-26306704 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBXN11  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblUBXN11 - 1p36.11 [CytoView hg19]  UBXN11 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIUBXN11 [Mapview hg19]  UBXN11 [Mapview hg38]
OMIM609151   
Gene and transcription
Genbank (Entrez)AF370425 AF520989 AF521017 AF521018 AK074358
RefSeq transcript (Entrez)NM_001077262 NM_145345 NM_183008
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBXN11
Cluster EST : UnigeneHs.145061 [ NCBI ]
CGAP (NCI)Hs.145061
Alternative Splicing GalleryENSG00000158062
Gene ExpressionUBXN11 [ NCBI-GEO ]   UBXN11 [ EBI - ARRAY_EXPRESS ]   UBXN11 [ SEEK ]   UBXN11 [ MEM ]
Gene Expression Viewer (FireBrowse)UBXN11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91544
GTEX Portal (Tissue expression)UBXN11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T124   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T124  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T124
Splice isoforms : SwissVarQ5T124
PhosPhoSitePlusQ5T124
Domaine pattern : Prosite (Expaxy)SEP (PS51399)    UBX (PS50033)   
Domains : Interpro (EBI)SEP_domain    Ubiquitin-rel_dom    UBX_dom   
Domain families : Pfam (Sanger)SEP (PF08059)    UBX (PF00789)   
Domain families : Pfam (NCBI)pfam08059    pfam00789   
Conserved Domain (NCBI)UBXN11
DMDM Disease mutations91544
Blocks (Seattle)UBXN11
SuperfamilyQ5T124
Human Protein AtlasENSG00000158062
Peptide AtlasQ5T124
HPRD10245
IPIIPI00383535   IPI00328385   IPI00167763   IPI00845496   IPI00645981   IPI00549916   IPI00845464   IPI00827785   IPI01009724   IPI00640205   IPI00647033   IPI00646581   IPI01018284   IPI00816619   
Protein Interaction databases
DIP (DOE-UCLA)Q5T124
IntAct (EBI)Q5T124
FunCoupENSG00000158062
BioGRIDUBXN11
STRING (EMBL)UBXN11
ZODIACUBXN11
Ontologies - Pathways
QuickGOQ5T124
Ontology : AmiGOprotein binding  cytoplasm  cytoskeleton  ubiquitin binding  proteasome-mediated ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoskeleton  ubiquitin binding  proteasome-mediated ubiquitin-dependent protein catabolic process  
NDEx NetworkUBXN11
Atlas of Cancer Signalling NetworkUBXN11
Wikipedia pathwaysUBXN11
Orthology - Evolution
OrthoDB91544
GeneTree (enSembl)ENSG00000158062
Phylogenetic Trees/Animal Genes : TreeFamUBXN11
HOVERGENQ5T124
HOGENOMQ5T124
Homologs : HomoloGeneUBXN11
Homology/Alignments : Family Browser (UCSC)UBXN11
Gene fusions - Rearrangements
Fusion : MitelmanUGCG/UBXN11 [9q31.3/1p36.11]  [t(1;9)(p36;q31)]  
Fusion: TCGAUGCG 9q31.3 UBXN11 1p36.11 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBXN11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBXN11
dbVarUBXN11
ClinVarUBXN11
1000_GenomesUBXN11 
Exome Variant ServerUBXN11
ExAC (Exome Aggregation Consortium)UBXN11 (select the gene name)
Genetic variants : HAPMAP91544
Genomic Variants (DGV)UBXN11 [DGVbeta]
DECIPHERUBXN11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBXN11 
Mutations
ICGC Data PortalUBXN11 
TCGA Data PortalUBXN11 
Broad Tumor PortalUBXN11
OASIS PortalUBXN11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBXN11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBXN11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBXN11
DgiDB (Drug Gene Interaction Database)UBXN11
DoCM (Curated mutations)UBXN11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBXN11 (select a term)
intoGenUBXN11
Cancer3DUBXN11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609151   
Orphanet
MedgenUBXN11
Genetic Testing Registry UBXN11
NextProtQ5T124 [Medical]
TSGene91544
GENETestsUBXN11
Target ValidationUBXN11
Huge Navigator UBXN11 [HugePedia]
snp3D : Map Gene to Disease91544
BioCentury BCIQUBXN11
ClinGenUBXN11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91544
Chemical/Pharm GKB GenePA162408338
Clinical trialUBXN11
Miscellaneous
canSAR (ICR)UBXN11 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBXN11
EVEXUBXN11
GoPubMedUBXN11
iHOPUBXN11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:46 CEST 2017

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