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UBXN2B (UBX domain protein 2B)

Identity

Alias_symbol (synonym)p37
Other alias
HGNC (Hugo) UBXN2B
LocusID (NCBI) 137886
Atlas_Id 56552
Location 8q12.1  [Link to chromosome band 8q12]
Location_base_pair Starts at 58411264 and ends at 58451501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL14A1 (8q24.12) / UBXN2B (8q12.1)UBE3C (7q36.3) / UBXN2B (8q12.1)UBXN2B (8q12.1) / SFXN2 (10q24.32)
UBXN2B (8q12.1) / WDR7 (18q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBXN2B   27035
Cards
Entrez_Gene (NCBI)UBXN2B  137886  UBX domain protein 2B
Aliasesp37
GeneCards (Weizmann)UBXN2B
Ensembl hg19 (Hinxton)ENSG00000215114 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215114 [Gene_View]  chr8:58411264-58451501 [Contig_View]  UBXN2B [Vega]
ICGC DataPortalENSG00000215114
TCGA cBioPortalUBXN2B
AceView (NCBI)UBXN2B
Genatlas (Paris)UBXN2B
WikiGenes137886
SOURCE (Princeton)UBXN2B
Genetics Home Reference (NIH)UBXN2B
Genomic and cartography
GoldenPath hg38 (UCSC)UBXN2B  -     chr8:58411264-58451501 +  8q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBXN2B  -     8q12.1   [Description]    (hg19-Feb_2009)
EnsemblUBXN2B - 8q12.1 [CytoView hg19]  UBXN2B - 8q12.1 [CytoView hg38]
Mapping of homologs : NCBIUBXN2B [Mapview hg19]  UBXN2B [Mapview hg38]
OMIM610686   
Gene and transcription
Genbank (Entrez)AK054658 AK091561 AK126300 AL831990 AL833075
RefSeq transcript (Entrez)NM_001077619 NM_001330535
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBXN2B
Cluster EST : UnigeneHs.155572 [ NCBI ]
CGAP (NCI)Hs.155572
Alternative Splicing GalleryENSG00000215114
Gene ExpressionUBXN2B [ NCBI-GEO ]   UBXN2B [ EBI - ARRAY_EXPRESS ]   UBXN2B [ SEEK ]   UBXN2B [ MEM ]
Gene Expression Viewer (FireBrowse)UBXN2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137886
GTEX Portal (Tissue expression)UBXN2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CS0
Splice isoforms : SwissVarQ14CS0
PhosPhoSitePlusQ14CS0
Domaine pattern : Prosite (Expaxy)SEP (PS51399)    UBX (PS50033)   
Domains : Interpro (EBI)SEP_domain    Ubiquitin-rel_dom    UBX_dom   
Domain families : Pfam (Sanger)SEP (PF08059)    UBX (PF00789)   
Domain families : Pfam (NCBI)pfam08059    pfam00789   
Domain families : Smart (EMBL)SEP (SM00553)  UBX (SM00166)  
Conserved Domain (NCBI)UBXN2B
DMDM Disease mutations137886
Blocks (Seattle)UBXN2B
SuperfamilyQ14CS0
Human Protein AtlasENSG00000215114
Peptide AtlasQ14CS0
IPIIPI00048500   IPI00974180   IPI01009617   IPI00976990   
Protein Interaction databases
DIP (DOE-UCLA)Q14CS0
IntAct (EBI)Q14CS0
FunCoupENSG00000215114
BioGRIDUBXN2B
STRING (EMBL)UBXN2B
ZODIACUBXN2B
Ontologies - Pathways
QuickGOQ14CS0
Ontology : AmiGOprotein binding  nucleus  endoplasmic reticulum  Golgi apparatus  cytosol  Golgi organization  nuclear envelope reassembly  ubiquitin binding  proteasome-mediated ubiquitin-dependent protein catabolic process  membrane fusion  
Ontology : EGO-EBIprotein binding  nucleus  endoplasmic reticulum  Golgi apparatus  cytosol  Golgi organization  nuclear envelope reassembly  ubiquitin binding  proteasome-mediated ubiquitin-dependent protein catabolic process  membrane fusion  
NDEx NetworkUBXN2B
Atlas of Cancer Signalling NetworkUBXN2B
Wikipedia pathwaysUBXN2B
Orthology - Evolution
OrthoDB137886
GeneTree (enSembl)ENSG00000215114
Phylogenetic Trees/Animal Genes : TreeFamUBXN2B
HOVERGENQ14CS0
HOGENOMQ14CS0
Homologs : HomoloGeneUBXN2B
Homology/Alignments : Family Browser (UCSC)UBXN2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBXN2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBXN2B
dbVarUBXN2B
ClinVarUBXN2B
1000_GenomesUBXN2B 
Exome Variant ServerUBXN2B
ExAC (Exome Aggregation Consortium)UBXN2B (select the gene name)
Genetic variants : HAPMAP137886
Genomic Variants (DGV)UBXN2B [DGVbeta]
DECIPHERUBXN2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBXN2B 
Mutations
ICGC Data PortalUBXN2B 
TCGA Data PortalUBXN2B 
Broad Tumor PortalUBXN2B
OASIS PortalUBXN2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBXN2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBXN2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBXN2B
DgiDB (Drug Gene Interaction Database)UBXN2B
DoCM (Curated mutations)UBXN2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBXN2B (select a term)
intoGenUBXN2B
Cancer3DUBXN2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610686   
Orphanet
MedgenUBXN2B
Genetic Testing Registry UBXN2B
NextProtQ14CS0 [Medical]
TSGene137886
GENETestsUBXN2B
Target ValidationUBXN2B
Huge Navigator UBXN2B [HugePedia]
snp3D : Map Gene to Disease137886
BioCentury BCIQUBXN2B
ClinGenUBXN2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137886
Chemical/Pharm GKB GenePA162408394
Clinical trialUBXN2B
Miscellaneous
canSAR (ICR)UBXN2B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBXN2B
EVEXUBXN2B
GoPubMedUBXN2B
iHOPUBXN2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:18:16 CEST 2017

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