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UBXN4 (UBX domain protein 4)

Identity

Alias_namesUBXDC1
UBXD2
UBX domain-containing 2
UBX domain containing 2
Alias_symbol (synonym)KIAA0242
Other aliaserasin
HGNC (Hugo) UBXN4
LocusID (NCBI) 23190
Atlas_Id 75449
Location 2q21.3  [Link to chromosome band 2q21]
Location_base_pair Starts at 135741619 and ends at 135785063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCA11P (4p16.3) / UBXN4 (2q21.3)CTNNA2 (2p12) / UBXN4 (2q21.3)PHB2 (12p13.31) / UBXN4 (2q21.3)
RRBP1 (20p12.1) / UBXN4 (2q21.3)UBXN4 (2q21.3) / R3HDM1 (2q21.3)UBXN4 (2q21.3) / UBXN4 (2q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBXN4   14860
Cards
Entrez_Gene (NCBI)UBXN4  23190  UBX domain protein 4
AliasesUBXD2; UBXDC1; erasin
GeneCards (Weizmann)UBXN4
Ensembl hg19 (Hinxton)ENSG00000144224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144224 [Gene_View]  chr2:135741619-135785063 [Contig_View]  UBXN4 [Vega]
ICGC DataPortalENSG00000144224
TCGA cBioPortalUBXN4
AceView (NCBI)UBXN4
Genatlas (Paris)UBXN4
WikiGenes23190
SOURCE (Princeton)UBXN4
Genetics Home Reference (NIH)UBXN4
Genomic and cartography
GoldenPath hg38 (UCSC)UBXN4  -     chr2:135741619-135785063 +  2q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBXN4  -     2q21.3   [Description]    (hg19-Feb_2009)
EnsemblUBXN4 - 2q21.3 [CytoView hg19]  UBXN4 - 2q21.3 [CytoView hg38]
Mapping of homologs : NCBIUBXN4 [Mapview hg19]  UBXN4 [Mapview hg38]
OMIM611216   
Gene and transcription
Genbank (Entrez)AI039259 AK026971 AK095402 AK292829 AK304096
RefSeq transcript (Entrez)NM_014607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBXN4
Cluster EST : UnigeneHs.591242 [ NCBI ]
CGAP (NCI)Hs.591242
Alternative Splicing GalleryENSG00000144224
Gene ExpressionUBXN4 [ NCBI-GEO ]   UBXN4 [ EBI - ARRAY_EXPRESS ]   UBXN4 [ SEEK ]   UBXN4 [ MEM ]
Gene Expression Viewer (FireBrowse)UBXN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23190
GTEX Portal (Tissue expression)UBXN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92575   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92575  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92575
Splice isoforms : SwissVarQ92575
PhosPhoSitePlusQ92575
Domaine pattern : Prosite (Expaxy)UBX (PS50033)   
Domains : Interpro (EBI)Thioredoxin-like_fold    Ubiquitin-rel_dom    UBX_dom   
Domain families : Pfam (Sanger)UBX (PF00789)   
Domain families : Pfam (NCBI)pfam00789   
Domain families : Smart (EMBL)UBX (SM00166)  
Conserved Domain (NCBI)UBXN4
DMDM Disease mutations23190
Blocks (Seattle)UBXN4
PDB (SRS)2KXJ   
PDB (PDBSum)2KXJ   
PDB (IMB)2KXJ   
PDB (RSDB)2KXJ   
Structural Biology KnowledgeBase2KXJ   
SCOP (Structural Classification of Proteins)2KXJ   
CATH (Classification of proteins structures)2KXJ   
SuperfamilyQ92575
Human Protein AtlasENSG00000144224
Peptide AtlasQ92575
HPRD18254
IPIIPI00293946   IPI01014872   IPI00448916   IPI00916552   IPI00917307   
Protein Interaction databases
DIP (DOE-UCLA)Q92575
IntAct (EBI)Q92575
FunCoupENSG00000144224
BioGRIDUBXN4
STRING (EMBL)UBXN4
ZODIACUBXN4
Ontologies - Pathways
QuickGOQ92575
Ontology : AmiGOprotein binding  nuclear envelope  endoplasmic reticulum  endoplasmic reticulum membrane  cytosol  response to unfolded protein  ubiquitin-dependent ERAD pathway  
Ontology : EGO-EBIprotein binding  nuclear envelope  endoplasmic reticulum  endoplasmic reticulum membrane  cytosol  response to unfolded protein  ubiquitin-dependent ERAD pathway  
NDEx NetworkUBXN4
Atlas of Cancer Signalling NetworkUBXN4
Wikipedia pathwaysUBXN4
Orthology - Evolution
OrthoDB23190
GeneTree (enSembl)ENSG00000144224
Phylogenetic Trees/Animal Genes : TreeFamUBXN4
HOVERGENQ92575
HOGENOMQ92575
Homologs : HomoloGeneUBXN4
Homology/Alignments : Family Browser (UCSC)UBXN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBXN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBXN4
dbVarUBXN4
ClinVarUBXN4
1000_GenomesUBXN4 
Exome Variant ServerUBXN4
ExAC (Exome Aggregation Consortium)UBXN4 (select the gene name)
Genetic variants : HAPMAP23190
Genomic Variants (DGV)UBXN4 [DGVbeta]
DECIPHERUBXN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBXN4 
Mutations
ICGC Data PortalUBXN4 
TCGA Data PortalUBXN4 
Broad Tumor PortalUBXN4
OASIS PortalUBXN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBXN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBXN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBXN4
DgiDB (Drug Gene Interaction Database)UBXN4
DoCM (Curated mutations)UBXN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBXN4 (select a term)
intoGenUBXN4
Cancer3DUBXN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611216   
Orphanet
MedgenUBXN4
Genetic Testing Registry UBXN4
NextProtQ92575 [Medical]
TSGene23190
GENETestsUBXN4
Target ValidationUBXN4
Huge Navigator UBXN4 [HugePedia]
snp3D : Map Gene to Disease23190
BioCentury BCIQUBXN4
ClinGenUBXN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23190
Chemical/Pharm GKB GenePA37912
Clinical trialUBXN4
Miscellaneous
canSAR (ICR)UBXN4 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBXN4
EVEXUBXN4
GoPubMedUBXN4
iHOPUBXN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:48:05 CEST 2017

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