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UBXN6 (UBX domain protein 6)

Identity

Alias_namesUBXD1
UBX domain-containing 1
UBX domain containing 1
Alias_symbol (synonym)UBXDC2
Other alias
HGNC (Hugo) UBXN6
LocusID (NCBI) 80700
Atlas_Id 75450
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4445006 and ends at 4455298 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NHP2 (5q35.3) / UBXN6 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBXN6   14928
Cards
Entrez_Gene (NCBI)UBXN6  80700  UBX domain protein 6
AliasesUBXD1; UBXDC2
GeneCards (Weizmann)UBXN6
Ensembl hg19 (Hinxton)ENSG00000167671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167671 [Gene_View]  chr19:4445006-4455298 [Contig_View]  UBXN6 [Vega]
ICGC DataPortalENSG00000167671
TCGA cBioPortalUBXN6
AceView (NCBI)UBXN6
Genatlas (Paris)UBXN6
WikiGenes80700
SOURCE (Princeton)UBXN6
Genetics Home Reference (NIH)UBXN6
Genomic and cartography
GoldenPath hg38 (UCSC)UBXN6  -     chr19:4445006-4455298 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBXN6  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblUBXN6 - 19p13.3 [CytoView hg19]  UBXN6 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIUBXN6 [Mapview hg19]  UBXN6 [Mapview hg38]
OMIM611946   
Gene and transcription
Genbank (Entrez)AF272893 AF272894 AK090473 AL833695 BC007414
RefSeq transcript (Entrez)NM_001171091 NM_025241
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBXN6
Cluster EST : UnigeneHs.435255 [ NCBI ]
CGAP (NCI)Hs.435255
Alternative Splicing GalleryENSG00000167671
Gene ExpressionUBXN6 [ NCBI-GEO ]   UBXN6 [ EBI - ARRAY_EXPRESS ]   UBXN6 [ SEEK ]   UBXN6 [ MEM ]
Gene Expression Viewer (FireBrowse)UBXN6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80700
GTEX Portal (Tissue expression)UBXN6
Human Protein AtlasENSG00000167671-UBXN6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZV1
Splice isoforms : SwissVarQ9BZV1
PhosPhoSitePlusQ9BZV1
Domaine pattern : Prosite (Expaxy)UBX (PS50033)   
Domains : Interpro (EBI)PUB_domain    Ubiquitin-rel_dom    UBX_dom   
Domain families : Pfam (Sanger)PUB (PF09409)    UBX (PF00789)   
Domain families : Pfam (NCBI)pfam09409    pfam00789   
Domain families : Smart (EMBL)PUG (SM00580)  UBX (SM00166)  
Conserved Domain (NCBI)UBXN6
DMDM Disease mutations80700
Blocks (Seattle)UBXN6
SuperfamilyQ9BZV1
Human Protein Atlas [tissue]ENSG00000167671-UBXN6 [tissue]
Peptide AtlasQ9BZV1
HPRD18253
IPIIPI00019276   IPI00163100   IPI00386176   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZV1
IntAct (EBI)Q9BZV1
FunCoupENSG00000167671
BioGRIDUBXN6
STRING (EMBL)UBXN6
ZODIACUBXN6
Ontologies - Pathways
QuickGOQ9BZV1
Ontology : AmiGOmolecular_function  protein binding  nucleus  cytoplasm  microtubule organizing center  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  cytoplasm  microtubule organizing center  biological_process  extracellular exosome  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkUBXN6
Atlas of Cancer Signalling NetworkUBXN6
Wikipedia pathwaysUBXN6
Orthology - Evolution
OrthoDB80700
GeneTree (enSembl)ENSG00000167671
Phylogenetic Trees/Animal Genes : TreeFamUBXN6
HOVERGENQ9BZV1
HOGENOMQ9BZV1
Homologs : HomoloGeneUBXN6
Homology/Alignments : Family Browser (UCSC)UBXN6
Gene fusions - Rearrangements
Tumor Fusion PortalUBXN6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBXN6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBXN6
dbVarUBXN6
ClinVarUBXN6
1000_GenomesUBXN6 
Exome Variant ServerUBXN6
ExAC (Exome Aggregation Consortium)ENSG00000167671
GNOMAD BrowserENSG00000167671
Genetic variants : HAPMAP80700
Genomic Variants (DGV)UBXN6 [DGVbeta]
DECIPHERUBXN6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBXN6 
Mutations
ICGC Data PortalUBXN6 
TCGA Data PortalUBXN6 
Broad Tumor PortalUBXN6
OASIS PortalUBXN6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBXN6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUBXN6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBXN6
DgiDB (Drug Gene Interaction Database)UBXN6
DoCM (Curated mutations)UBXN6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBXN6 (select a term)
intoGenUBXN6
Cancer3DUBXN6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611946   
Orphanet
DisGeNETUBXN6
MedgenUBXN6
Genetic Testing Registry UBXN6
NextProtQ9BZV1 [Medical]
TSGene80700
GENETestsUBXN6
Target ValidationUBXN6
Huge Navigator UBXN6 [HugePedia]
snp3D : Map Gene to Disease80700
BioCentury BCIQUBXN6
ClinGenUBXN6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80700
Chemical/Pharm GKB GenePA162408446
Clinical trialUBXN6
Miscellaneous
canSAR (ICR)UBXN6 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBXN6
EVEXUBXN6
GoPubMedUBXN6
iHOPUBXN6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:40:16 CET 2017

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