Atlas of Genetics and Cytogenetics in Oncology and Haematology


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UBXN7 (UBX domain protein 7)

Identity

Alias_namesUBXD7
UBX domain containing 7
Alias_symbol (synonym)KIAA0794
Other alias
HGNC (Hugo) UBXN7
LocusID (NCBI) 26043
Atlas_Id 75451
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196353498 and ends at 196432474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EIF4E (4q23) / UBXN7 (3q29)MICB (6p21.33) / UBXN7 (3q29)UBXN7 (3q29) / DLG1 (3q29)
UBXN7 (3q29) / GRN (17q21.31)UBXN7 (3q29) / PLD4 (14q32.33)UBXN7 (3q29) / RPL39L (3q27.3)
UBXN7 (3q29) / UBXN7 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UBXN7   29119
Cards
Entrez_Gene (NCBI)UBXN7  26043  UBX domain protein 7
AliasesUBXD7
GeneCards (Weizmann)UBXN7
Ensembl hg19 (Hinxton)ENSG00000163960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163960 [Gene_View]  ENSG00000163960 [Sequence]  chr3:196353498-196432474 [Contig_View]  UBXN7 [Vega]
ICGC DataPortalENSG00000163960
TCGA cBioPortalUBXN7
AceView (NCBI)UBXN7
Genatlas (Paris)UBXN7
WikiGenes26043
SOURCE (Princeton)UBXN7
Genetics Home Reference (NIH)UBXN7
Genomic and cartography
GoldenPath hg38 (UCSC)UBXN7  -     chr3:196353498-196432474 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBXN7  -     3q29   [Description]    (hg19-Feb_2009)
GoldenPathUBXN7 - 3q29 [CytoView hg19]  UBXN7 - 3q29 [CytoView hg38]
ImmunoBaseENSG00000163960
Mapping of homologs : NCBIUBXN7 [Mapview hg19]  UBXN7 [Mapview hg38]
OMIM616379   
Gene and transcription
Genbank (Entrez)AB018337 AK026451 AK129880 AK303630 AK307899
RefSeq transcript (Entrez)NM_015562
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBXN7
Cluster EST : UnigeneHs.518524 [ NCBI ]
CGAP (NCI)Hs.518524
Alternative Splicing GalleryENSG00000163960
Gene ExpressionUBXN7 [ NCBI-GEO ]   UBXN7 [ EBI - ARRAY_EXPRESS ]   UBXN7 [ SEEK ]   UBXN7 [ MEM ]
Gene Expression Viewer (FireBrowse)UBXN7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26043
GTEX Portal (Tissue expression)UBXN7
Human Protein AtlasENSG00000163960-UBXN7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94888   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94888  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94888
Splice isoforms : SwissVarO94888
PhosPhoSitePlusO94888
Domaine pattern : Prosite (Expaxy)UBX (PS50033)   
Domains : Interpro (EBI)Thioredoxin-like_sf    UAS    UBA-like_sf    Ubiquitin-like_domsf    UBX_7/2    UBX_dom   
Domain families : Pfam (Sanger)UBX (PF00789)   
Domain families : Pfam (NCBI)pfam00789   
Domain families : Smart (EMBL)UAS (SM00594)  UBX (SM00166)  
Conserved Domain (NCBI)UBXN7
DMDM Disease mutations26043
Blocks (Seattle)UBXN7
PDB (RSDB)1WJ4    2DAL    2DLX    5X3P    5X4L   
PDB Europe1WJ4    2DAL    2DLX    5X3P    5X4L   
PDB (PDBSum)1WJ4    2DAL    2DLX    5X3P    5X4L   
PDB (IMB)1WJ4    2DAL    2DLX    5X3P    5X4L   
Structural Biology KnowledgeBase1WJ4    2DAL    2DLX    5X3P    5X4L   
SCOP (Structural Classification of Proteins)1WJ4    2DAL    2DLX    5X3P    5X4L   
CATH (Classification of proteins structures)1WJ4    2DAL    2DLX    5X3P    5X4L   
SuperfamilyO94888
Human Protein Atlas [tissue]ENSG00000163960-UBXN7 [tissue]
Peptide AtlasO94888
IPIIPI00742124   IPI00926886   IPI00926703   IPI00927120   IPI00744421   
Protein Interaction databases
DIP (DOE-UCLA)O94888
IntAct (EBI)O94888
FunCoupENSG00000163960
BioGRIDUBXN7
STRING (EMBL)UBXN7
ZODIACUBXN7
Ontologies - Pathways
QuickGOO94888
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  transcription factor binding  nuclear body  ubiquitin protein ligase binding  VCP-NPL4-UFD1 AAA ATPase complex  ubiquitin binding  post-translational protein modification  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  transcription factor binding  nuclear body  ubiquitin protein ligase binding  VCP-NPL4-UFD1 AAA ATPase complex  ubiquitin binding  post-translational protein modification  
NDEx NetworkUBXN7
Atlas of Cancer Signalling NetworkUBXN7
Wikipedia pathwaysUBXN7
Orthology - Evolution
OrthoDB26043
GeneTree (enSembl)ENSG00000163960
Phylogenetic Trees/Animal Genes : TreeFamUBXN7
HOGENOMO94888
Homologs : HomoloGeneUBXN7
Homology/Alignments : Family Browser (UCSC)UBXN7
Gene fusions - Rearrangements
Fusion : QuiverUBXN7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBXN7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBXN7
dbVarUBXN7
ClinVarUBXN7
1000_GenomesUBXN7 
Exome Variant ServerUBXN7
ExAC (Exome Aggregation Consortium)ENSG00000163960
GNOMAD BrowserENSG00000163960
Varsome BrowserUBXN7
Genetic variants : HAPMAP26043
Genomic Variants (DGV)UBXN7 [DGVbeta]
DECIPHERUBXN7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBXN7 
Mutations
ICGC Data PortalUBXN7 
TCGA Data PortalUBXN7 
Broad Tumor PortalUBXN7
OASIS PortalUBXN7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBXN7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBXN7
Mutations and Diseases : HGMDUBXN7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBXN7
DgiDB (Drug Gene Interaction Database)UBXN7
DoCM (Curated mutations)UBXN7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBXN7 (select a term)
intoGenUBXN7
Cancer3DUBXN7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616379   
Orphanet
DisGeNETUBXN7
MedgenUBXN7
Genetic Testing Registry UBXN7
NextProtO94888 [Medical]
TSGene26043
GENETestsUBXN7
Target ValidationUBXN7
Huge Navigator UBXN7 [HugePedia]
snp3D : Map Gene to Disease26043
BioCentury BCIQUBXN7
ClinGenUBXN7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26043
Chemical/Pharm GKB GenePA162408447
Clinical trialUBXN7
Miscellaneous
canSAR (ICR)UBXN7 (select the gene name)
DataMed IndexUBXN7
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBXN7
EVEXUBXN7
GoPubMedUBXN7
iHOPUBXN7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Sep 3 16:12:13 CEST 2019

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