Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UCA1 (urothelial cancer associated 1 (non-protein coding))

Identity

Alias_symbol (synonym)LINC00178
CUDR
UCAT1
onco-lncRNA-36
Other aliasNCRNA00178
HGNC (Hugo) UCA1
LocusID (NCBI) 652995
Atlas_Id 43575
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 15939757 and ends at 15947131 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UCA1   37126
Cards
Entrez_Gene (NCBI)UCA1  652995  urothelial cancer associated 1 (non-protein coding)
AliasesCUDR; LINC00178; NCRNA00178; UCAT1; 
onco-lncRNA-36
GeneCards (Weizmann)UCA1
Ensembl hg19 (Hinxton)ENSG00000214049 [Gene_View]  chr19:15939757-15947131 [Contig_View]  UCA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214049 [Gene_View]  chr19:15939757-15947131 [Contig_View]  UCA1 [Vega]
ICGC DataPortalENSG00000214049
TCGA cBioPortalUCA1
AceView (NCBI)UCA1
Genatlas (Paris)UCA1
WikiGenes652995
SOURCE (Princeton)UCA1
Genetics Home Reference (NIH)UCA1
Genomic and cartography
GoldenPath hg19 (UCSC)UCA1  -     chr19:15939757-15947131 +  19p13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UCA1  -     19p13.12   [Description]    (hg38-Dec_2013)
EnsemblUCA1 - 19p13.12 [CytoView hg19]  UCA1 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIUCA1 [Mapview hg19]  UCA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024303 AK092401 BC005351 BC017567 BC022824
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)UCA1
Cluster EST : UnigeneHs.644234 [ NCBI ]
CGAP (NCI)Hs.644234
Alternative Splicing GalleryENSG00000214049
Gene ExpressionUCA1 [ NCBI-GEO ]   UCA1 [ EBI - ARRAY_EXPRESS ]   UCA1 [ SEEK ]   UCA1 [ MEM ]
Gene Expression Viewer (FireBrowse)UCA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)652995
GTEX Portal (Tissue expression)UCA1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UCA1
DMDM Disease mutations652995
Blocks (Seattle)UCA1
Human Protein AtlasENSG00000214049
Protein Interaction databases
FunCoupENSG00000214049
BioGRIDUCA1
STRING (EMBL)UCA1
ZODIACUCA1
Ontologies - Pathways
Huge Navigator UCA1 [HugePedia]
snp3D : Map Gene to Disease652995
BioCentury BCIQUCA1
ClinGenUCA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD652995
Chemical/Pharm GKB GenePA165394504
Clinical trialUCA1
Miscellaneous
canSAR (ICR)UCA1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUCA1
EVEXUCA1
GoPubMedUCA1
iHOPUCA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:24:13 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.