Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UCMA (upper zone of growth plate and cartilage matrix associated)

Identity

Alias_namesC10orf49
chromosome 10 open reading frame 49
Other aliasGRP
GRP/UCMA
HGNC (Hugo) UCMA
LocusID (NCBI) 221044
Atlas_Id 75457
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 13221766 and ends at 13234328 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UCMA   25205
Cards
Entrez_Gene (NCBI)UCMA  221044  upper zone of growth plate and cartilage matrix associated
AliasesC10orf49; GRP; GRP/UCMA
GeneCards (Weizmann)UCMA
Ensembl hg19 (Hinxton)ENSG00000165623 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165623 [Gene_View]  chr10:13221766-13234328 [Contig_View]  UCMA [Vega]
ICGC DataPortalENSG00000165623
TCGA cBioPortalUCMA
AceView (NCBI)UCMA
Genatlas (Paris)UCMA
WikiGenes221044
SOURCE (Princeton)UCMA
Genetics Home Reference (NIH)UCMA
Genomic and cartography
GoldenPath hg38 (UCSC)UCMA  -     chr10:13221766-13234328 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UCMA  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblUCMA - 10p13 [CytoView hg19]  UCMA - 10p13 [CytoView hg38]
Mapping of homologs : NCBIUCMA [Mapview hg19]  UCMA [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA628504 BC018068 JX169863 JX169864 JX169865
RefSeq transcript (Entrez)NM_001303118 NM_001303119 NM_145314
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UCMA
Cluster EST : UnigeneHs.112998 [ NCBI ]
CGAP (NCI)Hs.112998
Alternative Splicing GalleryENSG00000165623
Gene ExpressionUCMA [ NCBI-GEO ]   UCMA [ EBI - ARRAY_EXPRESS ]   UCMA [ SEEK ]   UCMA [ MEM ]
Gene Expression Viewer (FireBrowse)UCMA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221044
GTEX Portal (Tissue expression)UCMA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVF2
Splice isoforms : SwissVarQ8WVF2
PhosPhoSitePlusQ8WVF2
Domains : Interpro (EBI)UCMA   
Domain families : Pfam (Sanger)UCMA (PF17085)   
Domain families : Pfam (NCBI)pfam17085   
Conserved Domain (NCBI)UCMA
DMDM Disease mutations221044
Blocks (Seattle)UCMA
SuperfamilyQ8WVF2
Human Protein AtlasENSG00000165623
Peptide AtlasQ8WVF2
HPRD12578
IPIIPI00103115   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVF2
IntAct (EBI)Q8WVF2
FunCoupENSG00000165623
BioGRIDUCMA
STRING (EMBL)UCMA
ZODIACUCMA
Ontologies - Pathways
QuickGOQ8WVF2
Ontology : AmiGOproteinaceous extracellular matrix  extracellular space  aggresome  negative regulation of osteoblast differentiation  perinuclear region of cytoplasm  
Ontology : EGO-EBIproteinaceous extracellular matrix  extracellular space  aggresome  negative regulation of osteoblast differentiation  perinuclear region of cytoplasm  
NDEx NetworkUCMA
Atlas of Cancer Signalling NetworkUCMA
Wikipedia pathwaysUCMA
Orthology - Evolution
OrthoDB221044
GeneTree (enSembl)ENSG00000165623
Phylogenetic Trees/Animal Genes : TreeFamUCMA
HOVERGENQ8WVF2
HOGENOMQ8WVF2
Homologs : HomoloGeneUCMA
Homology/Alignments : Family Browser (UCSC)UCMA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUCMA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UCMA
dbVarUCMA
ClinVarUCMA
1000_GenomesUCMA 
Exome Variant ServerUCMA
ExAC (Exome Aggregation Consortium)UCMA (select the gene name)
Genetic variants : HAPMAP221044
Genomic Variants (DGV)UCMA [DGVbeta]
DECIPHERUCMA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUCMA 
Mutations
ICGC Data PortalUCMA 
TCGA Data PortalUCMA 
Broad Tumor PortalUCMA
OASIS PortalUCMA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUCMA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUCMA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UCMA
DgiDB (Drug Gene Interaction Database)UCMA
DoCM (Curated mutations)UCMA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UCMA (select a term)
intoGenUCMA
Cancer3DUCMA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUCMA
Genetic Testing Registry UCMA
NextProtQ8WVF2 [Medical]
TSGene221044
GENETestsUCMA
Huge Navigator UCMA [HugePedia]
snp3D : Map Gene to Disease221044
BioCentury BCIQUCMA
ClinGenUCMA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221044
Chemical/Pharm GKB GenePA164727494
Clinical trialUCMA
Miscellaneous
canSAR (ICR)UCMA (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUCMA
EVEXUCMA
GoPubMedUCMA
iHOPUCMA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:00:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.