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UCMA (upper zone of growth plate and cartilage matrix associated)

Identity

Alias (NCBI)C10orf49
GRP
GRP/UCMA
HGNC (Hugo) UCMA
HGNC Previous nameC10orf49
HGNC Previous namechromosome 10 open reading frame 49
LocusID (NCBI) 221044
Atlas_Id 75457
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 13221766 and ends at 13234374 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UCMA   25205
Cards
Entrez_Gene (NCBI)UCMA    upper zone of growth plate and cartilage matrix associated
AliasesC10orf49; GRP; GRP/UCMA
GeneCards (Weizmann)UCMA
Ensembl hg19 (Hinxton)ENSG00000165623 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165623 [Gene_View]  ENSG00000165623 [Sequence]  chr10:13221766-13234374 [Contig_View]  UCMA [Vega]
ICGC DataPortalENSG00000165623
TCGA cBioPortalUCMA
AceView (NCBI)UCMA
Genatlas (Paris)UCMA
SOURCE (Princeton)UCMA
Genetics Home Reference (NIH)UCMA
Genomic and cartography
GoldenPath hg38 (UCSC)UCMA  -     chr10:13221766-13234374 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UCMA  -     10p13   [Description]    (hg19-Feb_2009)
GoldenPathUCMA - 10p13 [CytoView hg19]  UCMA - 10p13 [CytoView hg38]
ImmunoBaseENSG00000165623
Genome Data Viewer NCBIUCMA [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA628504 BC018068 JX169863 JX169864 JX169865
RefSeq transcript (Entrez)NM_001303118 NM_001303119 NM_145314
Consensus coding sequences : CCDS (NCBI)UCMA
Gene ExpressionUCMA [ NCBI-GEO ]   UCMA [ EBI - ARRAY_EXPRESS ]   UCMA [ SEEK ]   UCMA [ MEM ]
Gene Expression Viewer (FireBrowse)UCMA [ Firebrowse - Broad ]
GenevisibleExpression of UCMA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221044
GTEX Portal (Tissue expression)UCMA
Human Protein AtlasENSG00000165623-UCMA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVF2
PhosPhoSitePlusQ8WVF2
Domains : Interpro (EBI)UCMA   
Domain families : Pfam (Sanger)UCMA (PF17085)   
Domain families : Pfam (NCBI)pfam17085   
Conserved Domain (NCBI)UCMA
SuperfamilyQ8WVF2
AlphaFold pdb e-kbQ8WVF2   
Human Protein Atlas [tissue]ENSG00000165623-UCMA [tissue]
HPRD12578
Protein Interaction databases
DIP (DOE-UCLA)Q8WVF2
IntAct (EBI)Q8WVF2
BioGRIDUCMA
STRING (EMBL)UCMA
ZODIACUCMA
Ontologies - Pathways
QuickGOQ8WVF2
Ontology : AmiGOextracellular space  cytoplasm  extracellular matrix  BMP binding  negative regulation of osteoblast differentiation  embryonic skeletal system development  negative regulation of SMAD protein signal transduction  negative regulation of biomineralization  
Ontology : EGO-EBIextracellular space  cytoplasm  extracellular matrix  BMP binding  negative regulation of osteoblast differentiation  embryonic skeletal system development  negative regulation of SMAD protein signal transduction  negative regulation of biomineralization  
NDEx NetworkUCMA
Atlas of Cancer Signalling NetworkUCMA
Wikipedia pathwaysUCMA
Orthology - Evolution
OrthoDB221044
GeneTree (enSembl)ENSG00000165623
Phylogenetic Trees/Animal Genes : TreeFamUCMA
Homologs : HomoloGeneUCMA
Homology/Alignments : Family Browser (UCSC)UCMA
Gene fusions - Rearrangements
Fusion : QuiverUCMA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUCMA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UCMA
dbVarUCMA
ClinVarUCMA
MonarchUCMA
1000_GenomesUCMA 
Exome Variant ServerUCMA
GNOMAD BrowserENSG00000165623
Varsome BrowserUCMA
ACMGUCMA variants
VarityQ8WVF2
Genomic Variants (DGV)UCMA [DGVbeta]
DECIPHERUCMA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUCMA 
Mutations
ICGC Data PortalUCMA 
TCGA Data PortalUCMA 
Broad Tumor PortalUCMA
OASIS PortalUCMA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUCMA  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUCMA
Mutations and Diseases : HGMDUCMA
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUCMA
DgiDB (Drug Gene Interaction Database)UCMA
DoCM (Curated mutations)UCMA
CIViC (Clinical Interpretations of Variants in Cancer)UCMA
Cancer3DUCMA
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUCMA
MedgenUCMA
Genetic Testing Registry UCMA
NextProtQ8WVF2 [Medical]
GENETestsUCMA
Target ValidationUCMA
Huge Navigator UCMA [HugePedia]
ClinGenUCMA
Clinical trials, drugs, therapy
MyCancerGenomeUCMA
Protein Interactions : CTDUCMA
Pharm GKB GenePA164727494
PharosQ8WVF2
Clinical trialUCMA
Miscellaneous
canSAR (ICR)UCMA
HarmonizomeUCMA
DataMed IndexUCMA
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUCMA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:48 CEST 2021

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