Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UCN3 (urocortin 3)

Identity

Alias_symbol (synonym)UCNIII
SPC
Other aliasSCP
HGNC (Hugo) UCN3
LocusID (NCBI) 114131
Atlas_Id 50793
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5365009 and ends at 5374692 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UCN3   17781
Cards
Entrez_Gene (NCBI)UCN3  114131  urocortin 3
AliasesSCP; SPC; UCNIII
GeneCards (Weizmann)UCN3
Ensembl hg19 (Hinxton)ENSG00000178473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178473 [Gene_View]  chr10:5365009-5374692 [Contig_View]  UCN3 [Vega]
ICGC DataPortalENSG00000178473
TCGA cBioPortalUCN3
AceView (NCBI)UCN3
Genatlas (Paris)UCN3
WikiGenes114131
SOURCE (Princeton)UCN3
Genetics Home Reference (NIH)UCN3
Genomic and cartography
GoldenPath hg38 (UCSC)UCN3  -     chr10:5365009-5374692 +  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UCN3  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblUCN3 - 10p15.1 [CytoView hg19]  UCN3 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBIUCN3 [Mapview hg19]  UCN3 [Mapview hg38]
OMIM605901   
Gene and transcription
Genbank (Entrez)AY026949 BC069530 BC100867 BC100868 BC100869
RefSeq transcript (Entrez)NM_053049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UCN3
Cluster EST : UnigeneHs.680475 [ NCBI ]
CGAP (NCI)Hs.680475
Alternative Splicing GalleryENSG00000178473
Gene ExpressionUCN3 [ NCBI-GEO ]   UCN3 [ EBI - ARRAY_EXPRESS ]   UCN3 [ SEEK ]   UCN3 [ MEM ]
Gene Expression Viewer (FireBrowse)UCN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114131
GTEX Portal (Tissue expression)UCN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969E3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969E3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969E3
Splice isoforms : SwissVarQ969E3
PhosPhoSitePlusQ969E3
Domains : Interpro (EBI)CRF    Urocortin_II/III   
Domain families : Pfam (Sanger)CRF (PF00473)   
Domain families : Pfam (NCBI)pfam00473   
Conserved Domain (NCBI)UCN3
DMDM Disease mutations114131
Blocks (Seattle)UCN3
PDB (SRS)2RMH    3N93   
PDB (PDBSum)2RMH    3N93   
PDB (IMB)2RMH    3N93   
PDB (RSDB)2RMH    3N93   
Structural Biology KnowledgeBase2RMH    3N93   
SCOP (Structural Classification of Proteins)2RMH    3N93   
CATH (Classification of proteins structures)2RMH    3N93   
SuperfamilyQ969E3
Human Protein AtlasENSG00000178473
Peptide AtlasQ969E3
HPRD12066
IPIIPI00056311   
Protein Interaction databases
DIP (DOE-UCLA)Q969E3
IntAct (EBI)Q969E3
FunCoupENSG00000178473
BioGRIDUCN3
STRING (EMBL)UCN3
ZODIACUCN3
Ontologies - Pathways
QuickGOQ969E3
Ontology : AmiGOG-protein coupled receptor binding  hormone activity  extracellular region  extracellular space  adenylate cyclase-activating G-protein coupled receptor signaling pathway  digestion  response to glucose  cellular response to nutrient levels  positive regulation of insulin secretion  response to immobilization stress  response to starvation  varicosity  axon terminus  positive regulation of membrane potential  response to corticosterone  corticotropin-releasing hormone receptor 2 binding  cellular response to hypoxia  
Ontology : EGO-EBIG-protein coupled receptor binding  hormone activity  extracellular region  extracellular space  adenylate cyclase-activating G-protein coupled receptor signaling pathway  digestion  response to glucose  cellular response to nutrient levels  positive regulation of insulin secretion  response to immobilization stress  response to starvation  varicosity  axon terminus  positive regulation of membrane potential  response to corticosterone  corticotropin-releasing hormone receptor 2 binding  cellular response to hypoxia  
NDEx NetworkUCN3
Atlas of Cancer Signalling NetworkUCN3
Wikipedia pathwaysUCN3
Orthology - Evolution
OrthoDB114131
GeneTree (enSembl)ENSG00000178473
Phylogenetic Trees/Animal Genes : TreeFamUCN3
HOVERGENQ969E3
HOGENOMQ969E3
Homologs : HomoloGeneUCN3
Homology/Alignments : Family Browser (UCSC)UCN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUCN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UCN3
dbVarUCN3
ClinVarUCN3
1000_GenomesUCN3 
Exome Variant ServerUCN3
ExAC (Exome Aggregation Consortium)UCN3 (select the gene name)
Genetic variants : HAPMAP114131
Genomic Variants (DGV)UCN3 [DGVbeta]
DECIPHERUCN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUCN3 
Mutations
ICGC Data PortalUCN3 
TCGA Data PortalUCN3 
Broad Tumor PortalUCN3
OASIS PortalUCN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUCN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUCN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UCN3
DgiDB (Drug Gene Interaction Database)UCN3
DoCM (Curated mutations)UCN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UCN3 (select a term)
intoGenUCN3
Cancer3DUCN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605901   
Orphanet
MedgenUCN3
Genetic Testing Registry UCN3
NextProtQ969E3 [Medical]
TSGene114131
GENETestsUCN3
Target ValidationUCN3
Huge Navigator UCN3 [HugePedia]
snp3D : Map Gene to Disease114131
BioCentury BCIQUCN3
ClinGenUCN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114131
Chemical/Pharm GKB GenePA130413153
Clinical trialUCN3
Miscellaneous
canSAR (ICR)UCN3 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUCN3
EVEXUCN3
GoPubMedUCN3
iHOPUCN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:18:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.