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UFC1 (ubiquitin-fold modifier conjugating enzyme 1)

Identity

Alias_symbol (synonym)HSPC155
Other alias
HGNC (Hugo) UFC1
LocusID (NCBI) 51506
Atlas_Id 55162
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161153744 and ends at 161158856 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSF1R (5q32) / UFC1 (1q23.3)KXD1 (19p13.11) / UFC1 (1q23.3)UFC1 (1q23.3) / NPIPB7 (16q23.1)
UFC1 (1q23.3) / RHEB (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UFC1   26941
Cards
Entrez_Gene (NCBI)UFC1  51506  ubiquitin-fold modifier conjugating enzyme 1
AliasesHSPC155
GeneCards (Weizmann)UFC1
Ensembl hg19 (Hinxton)ENSG00000143222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143222 [Gene_View]  chr1:161153744-161158856 [Contig_View]  UFC1 [Vega]
ICGC DataPortalENSG00000143222
TCGA cBioPortalUFC1
AceView (NCBI)UFC1
Genatlas (Paris)UFC1
WikiGenes51506
SOURCE (Princeton)UFC1
Genetics Home Reference (NIH)UFC1
Genomic and cartography
GoldenPath hg38 (UCSC)UFC1  -     chr1:161153744-161158856 +  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UFC1  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblUFC1 - 1q23.3 [CytoView hg19]  UFC1 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIUFC1 [Mapview hg19]  UFC1 [Mapview hg38]
OMIM610554   
Gene and transcription
Genbank (Entrez)AB154405 AF151884 AF161504 AK292776 AK311562
RefSeq transcript (Entrez)NM_016406
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UFC1
Cluster EST : UnigeneHs.301412 [ NCBI ]
CGAP (NCI)Hs.301412
Alternative Splicing GalleryENSG00000143222
Gene ExpressionUFC1 [ NCBI-GEO ]   UFC1 [ EBI - ARRAY_EXPRESS ]   UFC1 [ SEEK ]   UFC1 [ MEM ]
Gene Expression Viewer (FireBrowse)UFC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51506
GTEX Portal (Tissue expression)UFC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3C8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3C8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3C8
Splice isoforms : SwissVarQ9Y3C8
PhosPhoSitePlusQ9Y3C8
Domains : Interpro (EBI)UBQ-conjugating_enzyme/RWD    Ufc1   
Domain families : Pfam (Sanger)UFC1 (PF08694)   
Domain families : Pfam (NCBI)pfam08694   
Conserved Domain (NCBI)UFC1
DMDM Disease mutations51506
Blocks (Seattle)UFC1
PDB (SRS)2K07    2Z6O    2Z6P    3EVX   
PDB (PDBSum)2K07    2Z6O    2Z6P    3EVX   
PDB (IMB)2K07    2Z6O    2Z6P    3EVX   
PDB (RSDB)2K07    2Z6O    2Z6P    3EVX   
Structural Biology KnowledgeBase2K07    2Z6O    2Z6P    3EVX   
SCOP (Structural Classification of Proteins)2K07    2Z6O    2Z6P    3EVX   
CATH (Classification of proteins structures)2K07    2Z6O    2Z6P    3EVX   
SuperfamilyQ9Y3C8
Human Protein AtlasENSG00000143222
Peptide AtlasQ9Y3C8
HPRD15643
IPIIPI00294495   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3C8
IntAct (EBI)Q9Y3C8
FunCoupENSG00000143222
BioGRIDUFC1
STRING (EMBL)UFC1
ZODIACUFC1
Ontologies - Pathways
QuickGOQ9Y3C8
Ontology : AmiGOprotein binding  cytoplasm  response to endoplasmic reticulum stress  extracellular exosome  UFM1 transferase activity  protein ufmylation  protein ufmylation  protein K69-linked ufmylation  
Ontology : EGO-EBIprotein binding  cytoplasm  response to endoplasmic reticulum stress  extracellular exosome  UFM1 transferase activity  protein ufmylation  protein ufmylation  protein K69-linked ufmylation  
NDEx NetworkUFC1
Atlas of Cancer Signalling NetworkUFC1
Wikipedia pathwaysUFC1
Orthology - Evolution
OrthoDB51506
GeneTree (enSembl)ENSG00000143222
Phylogenetic Trees/Animal Genes : TreeFamUFC1
HOVERGENQ9Y3C8
HOGENOMQ9Y3C8
Homologs : HomoloGeneUFC1
Homology/Alignments : Family Browser (UCSC)UFC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUFC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UFC1
dbVarUFC1
ClinVarUFC1
1000_GenomesUFC1 
Exome Variant ServerUFC1
ExAC (Exome Aggregation Consortium)UFC1 (select the gene name)
Genetic variants : HAPMAP51506
Genomic Variants (DGV)UFC1 [DGVbeta]
DECIPHERUFC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUFC1 
Mutations
ICGC Data PortalUFC1 
TCGA Data PortalUFC1 
Broad Tumor PortalUFC1
OASIS PortalUFC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUFC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUFC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UFC1
DgiDB (Drug Gene Interaction Database)UFC1
DoCM (Curated mutations)UFC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UFC1 (select a term)
intoGenUFC1
Cancer3DUFC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610554   
Orphanet
MedgenUFC1
Genetic Testing Registry UFC1
NextProtQ9Y3C8 [Medical]
TSGene51506
GENETestsUFC1
Target ValidationUFC1
Huge Navigator UFC1 [HugePedia]
snp3D : Map Gene to Disease51506
BioCentury BCIQUFC1
ClinGenUFC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51506
Chemical/Pharm GKB GenePA142670644
Clinical trialUFC1
Miscellaneous
canSAR (ICR)UFC1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUFC1
EVEXUFC1
GoPubMedUFC1
iHOPUFC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:49 CEST 2017

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