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UFD1 (ubiquitin recognition factor in ER associated degradation 1)

Identity

Other aliasUFD1L
HGNC (Hugo) UFD1
LocusID (NCBI) 7353
Atlas_Id 56823
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 19449941 and ends at 19479215 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UFD1   12520
Cards
Entrez_Gene (NCBI)UFD1  7353  ubiquitin recognition factor in ER associated degradation 1
AliasesUFD1L
GeneCards (Weizmann)UFD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:19449941-19479215 [Contig_View]  UFD1 [Vega]
TCGA cBioPortalUFD1
AceView (NCBI)UFD1
Genatlas (Paris)UFD1
WikiGenes7353
SOURCE (Princeton)UFD1
Genetics Home Reference (NIH)UFD1
Genomic and cartography
GoldenPath hg38 (UCSC)UFD1  -     chr22:19449941-19479215 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UFD1  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblUFD1 - 22q11.21 [CytoView hg19]  UFD1 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIUFD1 [Mapview hg19]  UFD1 [Mapview hg38]
OMIM601754   
Gene and transcription
Genbank (Entrez)AF141201 AJ239058 AK128120 AK225877 AK304734
RefSeq transcript (Entrez)NM_001035247 NM_005659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UFD1
Cluster EST : UnigeneHs.474213 [ NCBI ]
CGAP (NCI)Hs.474213
Gene ExpressionUFD1 [ NCBI-GEO ]   UFD1 [ EBI - ARRAY_EXPRESS ]   UFD1 [ SEEK ]   UFD1 [ MEM ]
Gene Expression Viewer (FireBrowse)UFD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7353
GTEX Portal (Tissue expression)UFD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92890   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92890  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92890
Splice isoforms : SwissVarQ92890
PhosPhoSitePlusQ92890
Domains : Interpro (EBI)UFD1   
Domain families : Pfam (Sanger)UFD1 (PF03152)   
Domain families : Pfam (NCBI)pfam03152   
Conserved Domain (NCBI)UFD1
DMDM Disease mutations7353
Blocks (Seattle)UFD1
PDB (SRS)2YUJ    5C1B   
PDB (PDBSum)2YUJ    5C1B   
PDB (IMB)2YUJ    5C1B   
PDB (RSDB)2YUJ    5C1B   
Structural Biology KnowledgeBase2YUJ    5C1B   
SCOP (Structural Classification of Proteins)2YUJ    5C1B   
CATH (Classification of proteins structures)2YUJ    5C1B   
SuperfamilyQ92890
Peptide AtlasQ92890
IPIIPI00655754   IPI00218292   IPI00654779   IPI00910767   IPI00873326   IPI00852988   IPI01011883   IPI00945833   IPI01010945   
Protein Interaction databases
DIP (DOE-UCLA)Q92890
IntAct (EBI)Q92890
BioGRIDUFD1
STRING (EMBL)UFD1
ZODIACUFD1
Ontologies - Pathways
QuickGOQ92890
Ontology : AmiGOskeletal system development  thiol-dependent ubiquitin-specific protease activity  receptor binding  protein binding  nucleus  nucleoplasm  endoplasmic reticulum  cytosol  ubiquitin-dependent protein catabolic process  protein deubiquitination  retrograde protein transport, ER to cytosol  protein complex binding  negative regulation of type I interferon production  VCP-NPL4-UFD1 AAA ATPase complex  VCP-NPL4-UFD1 AAA ATPase complex  K48-linked polyubiquitin binding  UFD1-NPL4 complex  negative regulation of RIG-I signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  ATPase binding  error-free translesion synthesis  ER-associated misfolded protein catabolic process  
Ontology : EGO-EBIskeletal system development  thiol-dependent ubiquitin-specific protease activity  receptor binding  protein binding  nucleus  nucleoplasm  endoplasmic reticulum  cytosol  ubiquitin-dependent protein catabolic process  protein deubiquitination  retrograde protein transport, ER to cytosol  protein complex binding  negative regulation of type I interferon production  VCP-NPL4-UFD1 AAA ATPase complex  VCP-NPL4-UFD1 AAA ATPase complex  K48-linked polyubiquitin binding  UFD1-NPL4 complex  negative regulation of RIG-I signaling pathway  proteasome-mediated ubiquitin-dependent protein catabolic process  ATPase binding  error-free translesion synthesis  ER-associated misfolded protein catabolic process  
NDEx NetworkUFD1
Atlas of Cancer Signalling NetworkUFD1
Wikipedia pathwaysUFD1
Orthology - Evolution
OrthoDB7353
Phylogenetic Trees/Animal Genes : TreeFamUFD1
HOVERGENQ92890
HOGENOMQ92890
Homologs : HomoloGeneUFD1
Homology/Alignments : Family Browser (UCSC)UFD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUFD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UFD1
dbVarUFD1
ClinVarUFD1
1000_GenomesUFD1 
Exome Variant ServerUFD1
ExAC (Exome Aggregation Consortium)UFD1 (select the gene name)
Genetic variants : HAPMAP7353
Genomic Variants (DGV)UFD1 [DGVbeta]
DECIPHERUFD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUFD1 
Mutations
ICGC Data PortalUFD1 
TCGA Data PortalUFD1 
Broad Tumor PortalUFD1
OASIS PortalUFD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUFD1
BioMutasearch UFD1
DgiDB (Drug Gene Interaction Database)UFD1
DoCM (Curated mutations)UFD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UFD1 (select a term)
intoGenUFD1
Cancer3DUFD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601754   
Orphanet
MedgenUFD1
Genetic Testing Registry UFD1
NextProtQ92890 [Medical]
TSGene7353
GENETestsUFD1
Target ValidationUFD1
Huge Navigator UFD1 [HugePedia]
snp3D : Map Gene to Disease7353
BioCentury BCIQUFD1
ClinGenUFD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7353
Chemical/Pharm GKB GenePA37167
Clinical trialUFD1
Miscellaneous
canSAR (ICR)UFD1 (select the gene name)
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUFD1
EVEXUFD1
GoPubMedUFD1
iHOPUFD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:37:19 CEST 2017

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