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UFM1 (ubiquitin fold modifier 1)

Identity

Alias_namesC13orf20
chromosome 13 open reading frame 20
Alias_symbol (synonym)bA131P10.1
Other aliasBM-002
HGNC (Hugo) UFM1
LocusID (NCBI) 51569
Atlas_Id 75461
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 38349771 and ends at 38363007 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UFM1 (13q13.3) / ASB8 (12q13.11)UFM1 (13q13.3) / UFM1 (13q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UFM1   20597
Cards
Entrez_Gene (NCBI)UFM1  51569  ubiquitin fold modifier 1
AliasesBM-002; C13orf20
GeneCards (Weizmann)UFM1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:38349771-38363007 [Contig_View]  UFM1 [Vega]
TCGA cBioPortalUFM1
AceView (NCBI)UFM1
Genatlas (Paris)UFM1
WikiGenes51569
SOURCE (Princeton)UFM1
Genetics Home Reference (NIH)UFM1
Genomic and cartography
GoldenPath hg38 (UCSC)UFM1  -     chr13:38349771-38363007 +  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UFM1  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblUFM1 - 13q13.3 [CytoView hg19]  UFM1 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBIUFM1 [Mapview hg19]  UFM1 [Mapview hg38]
OMIM610553   
Gene and transcription
Genbank (Entrez)AB154404 AF208844 AF369953 AK095490 AK307111
RefSeq transcript (Entrez)NM_001286703 NM_001286704 NM_001286705 NM_001286706 NM_016617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UFM1
Cluster EST : UnigeneHs.643655 [ NCBI ]
CGAP (NCI)Hs.643655
Gene ExpressionUFM1 [ NCBI-GEO ]   UFM1 [ EBI - ARRAY_EXPRESS ]   UFM1 [ SEEK ]   UFM1 [ MEM ]
Gene Expression Viewer (FireBrowse)UFM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51569
GTEX Portal (Tissue expression)UFM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61960   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61960  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61960
Splice isoforms : SwissVarP61960
PhosPhoSitePlusP61960
Domains : Interpro (EBI)Ubiquitin-rel_dom    UFM1   
Domain families : Pfam (Sanger)Ufm1 (PF03671)   
Domain families : Pfam (NCBI)pfam03671   
Conserved Domain (NCBI)UFM1
DMDM Disease mutations51569
Blocks (Seattle)UFM1
PDB (SRS)1WXS    5HKH    5IAA    5L95   
PDB (PDBSum)1WXS    5HKH    5IAA    5L95   
PDB (IMB)1WXS    5HKH    5IAA    5L95   
PDB (RSDB)1WXS    5HKH    5IAA    5L95   
Structural Biology KnowledgeBase1WXS    5HKH    5IAA    5L95   
SCOP (Structural Classification of Proteins)1WXS    5HKH    5IAA    5L95   
CATH (Classification of proteins structures)1WXS    5HKH    5IAA    5L95   
SuperfamilyP61960
Peptide AtlasP61960
HPRD15644
IPIIPI00010207   IPI00477342   IPI00064267   IPI00645510   
Protein Interaction databases
DIP (DOE-UCLA)P61960
IntAct (EBI)P61960
BioGRIDUFM1
STRING (EMBL)UFM1
ZODIACUFM1
Ontologies - Pathways
QuickGOP61960
Ontology : AmiGOprotein binding  nucleus  cytoplasm  endoplasmic reticulum  regulation of intracellular estrogen receptor signaling pathway  response to endoplasmic reticulum stress  negative regulation of apoptotic process  extracellular exosome  protein ufmylation  protein K69-linked ufmylation  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  endoplasmic reticulum  regulation of intracellular estrogen receptor signaling pathway  response to endoplasmic reticulum stress  negative regulation of apoptotic process  extracellular exosome  protein ufmylation  protein K69-linked ufmylation  
NDEx NetworkUFM1
Atlas of Cancer Signalling NetworkUFM1
Wikipedia pathwaysUFM1
Orthology - Evolution
OrthoDB51569
Phylogenetic Trees/Animal Genes : TreeFamUFM1
HOVERGENP61960
HOGENOMP61960
Homologs : HomoloGeneUFM1
Homology/Alignments : Family Browser (UCSC)UFM1
Gene fusions - Rearrangements
Tumor Fusion PortalUFM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUFM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UFM1
dbVarUFM1
ClinVarUFM1
1000_GenomesUFM1 
Exome Variant ServerUFM1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP51569
Genomic Variants (DGV)UFM1 [DGVbeta]
DECIPHERUFM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUFM1 
Mutations
ICGC Data PortalUFM1 
TCGA Data PortalUFM1 
Broad Tumor PortalUFM1
OASIS PortalUFM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUFM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUFM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UFM1
DgiDB (Drug Gene Interaction Database)UFM1
DoCM (Curated mutations)UFM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UFM1 (select a term)
intoGenUFM1
Cancer3DUFM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610553   
Orphanet
DisGeNETUFM1
MedgenUFM1
Genetic Testing Registry UFM1
NextProtP61960 [Medical]
TSGene51569
GENETestsUFM1
Target ValidationUFM1
Huge Navigator UFM1 [HugePedia]
snp3D : Map Gene to Disease51569
BioCentury BCIQUFM1
ClinGenUFM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51569
Chemical/Pharm GKB GenePA134863405
Clinical trialUFM1
Miscellaneous
canSAR (ICR)UFM1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUFM1
EVEXUFM1
GoPubMedUFM1
iHOPUFM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:07 CET 2017

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