Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UFSP2 (UFM1-specific peptidase 2)

Identity

Alias_namesC4orf20
chromosome 4 open reading frame 20
Alias_symbol (synonym)FLJ11200
Other alias
HGNC (Hugo) UFSP2
LocusID (NCBI) 55325
Atlas_Id 75463
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 186320694 and ends at 186347139 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UFSP2   25640
Cards
Entrez_Gene (NCBI)UFSP2  55325  UFM1-specific peptidase 2
AliasesC4orf20
GeneCards (Weizmann)UFSP2
Ensembl hg19 (Hinxton) [Gene_View]  chr4:186320694-186347139 [Contig_View]  UFSP2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:186320694-186347139 [Contig_View]  UFSP2 [Vega]
TCGA cBioPortalUFSP2
AceView (NCBI)UFSP2
Genatlas (Paris)UFSP2
WikiGenes55325
SOURCE (Princeton)UFSP2
Genetics Home Reference (NIH)UFSP2
Genomic and cartography
GoldenPath hg19 (UCSC)UFSP2  -     chr4:186320694-186347139 -  4q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UFSP2  -     4q35.1   [Description]    (hg38-Dec_2013)
EnsemblUFSP2 - 4q35.1 [CytoView hg19]  UFSP2 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBIUFSP2 [Mapview hg19]  UFSP2 [Mapview hg38]
OMIM611482   
Gene and transcription
Genbank (Entrez)AK002062 AK091635 BC010493 BF735169 BP264462
RefSeq transcript (Entrez)NM_018359
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)UFSP2
Cluster EST : UnigeneHs.713548 [ NCBI ]
CGAP (NCI)Hs.713548
Gene ExpressionUFSP2 [ NCBI-GEO ]   UFSP2 [ EBI - ARRAY_EXPRESS ]   UFSP2 [ SEEK ]   UFSP2 [ MEM ]
Gene Expression Viewer (FireBrowse)UFSP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55325
GTEX Portal (Tissue expression)UFSP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUQ7
Splice isoforms : SwissVarQ9NUQ7
PhosPhoSitePlusQ9NUQ7
Domains : Interpro (EBI)Peptidase_C78_UfSP1/2   
Domain families : Pfam (Sanger)Peptidase_C78 (PF07910)   
Domain families : Pfam (NCBI)pfam07910   
Conserved Domain (NCBI)UFSP2
DMDM Disease mutations55325
Blocks (Seattle)UFSP2
SuperfamilyQ9NUQ7
Peptide AtlasQ9NUQ7
HPRD07741
IPIIPI00305303   IPI00965069   IPI00965310   IPI00967019   IPI00965555   IPI00966715   IPI00965325   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUQ7
IntAct (EBI)Q9NUQ7
BioGRIDUFSP2
STRING (EMBL)UFSP2
ZODIACUFSP2
Ontologies - Pathways
QuickGOQ9NUQ7
Ontology : AmiGOprotein binding  nucleus  cytoplasm  endoplasmic reticulum  proteolysis  thiolester hydrolase activity  regulation of intracellular estrogen receptor signaling pathway  UFM1 hydrolase activity  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  endoplasmic reticulum  proteolysis  thiolester hydrolase activity  regulation of intracellular estrogen receptor signaling pathway  UFM1 hydrolase activity  
NDEx NetworkUFSP2
Atlas of Cancer Signalling NetworkUFSP2
Wikipedia pathwaysUFSP2
Orthology - Evolution
OrthoDB55325
Phylogenetic Trees/Animal Genes : TreeFamUFSP2
HOVERGENQ9NUQ7
HOGENOMQ9NUQ7
Homologs : HomoloGeneUFSP2
Homology/Alignments : Family Browser (UCSC)UFSP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUFSP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UFSP2
dbVarUFSP2
ClinVarUFSP2
1000_GenomesUFSP2 
Exome Variant ServerUFSP2
ExAC (Exome Aggregation Consortium)UFSP2 (select the gene name)
Genetic variants : HAPMAP55325
Genomic Variants (DGV)UFSP2 [DGVbeta]
DECIPHER (Syndromes)4:186320694-186347139  
CONAN: Copy Number AnalysisUFSP2 
Mutations
ICGC Data PortalUFSP2 
TCGA Data PortalUFSP2 
Broad Tumor PortalUFSP2
OASIS PortalUFSP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUFSP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUFSP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UFSP2
DgiDB (Drug Gene Interaction Database)UFSP2
DoCM (Curated mutations)UFSP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UFSP2 (select a term)
intoGenUFSP2
Cancer3DUFSP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611482   
Orphanet2024   
MedgenUFSP2
Genetic Testing Registry UFSP2
NextProtQ9NUQ7 [Medical]
TSGene55325
GENETestsUFSP2
Huge Navigator UFSP2 [HugePedia]
snp3D : Map Gene to Disease55325
BioCentury BCIQUFSP2
ClinGenUFSP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55325
Chemical/Pharm GKB GenePA162408529
Clinical trialUFSP2
Miscellaneous
canSAR (ICR)UFSP2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUFSP2
EVEXUFSP2
GoPubMedUFSP2
iHOPUFSP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:50:45 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.