Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UGGT1 (UDP-glucose glycoprotein glucosyltransferase 1)

Identity

Alias_namesUGCGL1
UDP-glucose ceramide glucosyltransferase-like 1
Alias_symbol (synonym)HUGT1
Other aliasUGT1
HGNC (Hugo) UGGT1
LocusID (NCBI) 56886
Atlas_Id 75466
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 128091180 and ends at 128195675 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C10orf99 (10q23.1) / UGGT1 (2q14.3)FOXP1 (3p13) / UGGT1 (2q14.3)ISM1 (20p12.1) / UGGT1 (2q14.3)
SLC30A6 (2p22.3) / UGGT1 (2q14.3)UGGT1 (2q14.3) / FAR1 (11p15.2)UGGT1 (2q14.3) / FOXP1 (3p13)
UGGT1 (2q14.3) / RPL36 (19p13.3)UGGT1 (2q14.3) / UGGT1 (2q14.3)VASH1 (14q24.3) / UGGT1 (2q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UGGT1   15663
Cards
Entrez_Gene (NCBI)UGGT1  56886  UDP-glucose glycoprotein glucosyltransferase 1
AliasesHUGT1; UGCGL1; UGT1
GeneCards (Weizmann)UGGT1
Ensembl hg19 (Hinxton)ENSG00000136731 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136731 [Gene_View]  chr2:128091180-128195675 [Contig_View]  UGGT1 [Vega]
ICGC DataPortalENSG00000136731
TCGA cBioPortalUGGT1
AceView (NCBI)UGGT1
Genatlas (Paris)UGGT1
WikiGenes56886
SOURCE (Princeton)UGGT1
Genetics Home Reference (NIH)UGGT1
Genomic and cartography
GoldenPath hg38 (UCSC)UGGT1  -     chr2:128091180-128195675 +  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UGGT1  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblUGGT1 - 2q14.3 [CytoView hg19]  UGGT1 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBIUGGT1 [Mapview hg19]  UGGT1 [Mapview hg38]
OMIM605897   
Gene and transcription
Genbank (Entrez)AF227905 AK023240 AK023671 AK074251 AK074376
RefSeq transcript (Entrez)NM_001025777 NM_020120
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UGGT1
Cluster EST : UnigeneHs.743306 [ NCBI ]
CGAP (NCI)Hs.743306
Alternative Splicing GalleryENSG00000136731
Gene ExpressionUGGT1 [ NCBI-GEO ]   UGGT1 [ EBI - ARRAY_EXPRESS ]   UGGT1 [ SEEK ]   UGGT1 [ MEM ]
Gene Expression Viewer (FireBrowse)UGGT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56886
GTEX Portal (Tissue expression)UGGT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYU2
Splice isoforms : SwissVarQ9NYU2
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ9NYU2
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)Nucleotide-diphossugar_trans    UDP-g_GGtrans   
Domain families : Pfam (Sanger)UDP-g_GGTase (PF06427)   
Domain families : Pfam (NCBI)pfam06427   
Conserved Domain (NCBI)UGGT1
DMDM Disease mutations56886
Blocks (Seattle)UGGT1
SuperfamilyQ9NYU2
Human Protein AtlasENSG00000136731
Peptide AtlasQ9NYU2
HPRD12064
IPIIPI00024466   IPI00619903   IPI00917426   IPI00916187   IPI00917513   IPI00927111   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYU2
IntAct (EBI)Q9NYU2
FunCoupENSG00000136731
BioGRIDUGGT1
STRING (EMBL)UGGT1
ZODIACUGGT1
Ontologies - Pathways
QuickGOQ9NYU2
Ontology : AmiGOUDP-glucose:glycoprotein glucosyltransferase activity  UDP-glucose:glycoprotein glucosyltransferase activity  protein binding  endoplasmic reticulum  endoplasmic reticulum lumen  endoplasmic reticulum-Golgi intermediate compartment  protein glycosylation  endoplasmic reticulum quality control compartment  unfolded protein binding  'de novo' posttranslational protein folding  extracellular exosome  UDP-glucosylation  endoplasmic reticulum mannose trimming  
Ontology : EGO-EBIUDP-glucose:glycoprotein glucosyltransferase activity  UDP-glucose:glycoprotein glucosyltransferase activity  protein binding  endoplasmic reticulum  endoplasmic reticulum lumen  endoplasmic reticulum-Golgi intermediate compartment  protein glycosylation  endoplasmic reticulum quality control compartment  unfolded protein binding  'de novo' posttranslational protein folding  extracellular exosome  UDP-glucosylation  endoplasmic reticulum mannose trimming  
Pathways : BIOCARTAER?associated degradation (ERAD) Pathway [Genes]   
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkUGGT1
Atlas of Cancer Signalling NetworkUGGT1
Wikipedia pathwaysUGGT1
Orthology - Evolution
OrthoDB56886
GeneTree (enSembl)ENSG00000136731
Phylogenetic Trees/Animal Genes : TreeFamUGGT1
HOVERGENQ9NYU2
HOGENOMQ9NYU2
Homologs : HomoloGeneUGGT1
Homology/Alignments : Family Browser (UCSC)UGGT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUGGT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UGGT1
dbVarUGGT1
ClinVarUGGT1
1000_GenomesUGGT1 
Exome Variant ServerUGGT1
ExAC (Exome Aggregation Consortium)UGGT1 (select the gene name)
Genetic variants : HAPMAP56886
Genomic Variants (DGV)UGGT1 [DGVbeta]
DECIPHERUGGT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUGGT1 
Mutations
ICGC Data PortalUGGT1 
TCGA Data PortalUGGT1 
Broad Tumor PortalUGGT1
OASIS PortalUGGT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUGGT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUGGT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UGGT1
DgiDB (Drug Gene Interaction Database)UGGT1
DoCM (Curated mutations)UGGT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UGGT1 (select a term)
intoGenUGGT1
Cancer3DUGGT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605897   
Orphanet
MedgenUGGT1
Genetic Testing Registry UGGT1
NextProtQ9NYU2 [Medical]
TSGene56886
GENETestsUGGT1
Target ValidationUGGT1
Huge Navigator UGGT1 [HugePedia]
snp3D : Map Gene to Disease56886
BioCentury BCIQUGGT1
ClinGenUGGT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56886
Chemical/Pharm GKB GenePA38014
Clinical trialUGGT1
Miscellaneous
canSAR (ICR)UGGT1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUGGT1
EVEXUGGT1
GoPubMedUGGT1
iHOPUGGT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:48:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.