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UGGT2 (UDP-glucose glycoprotein glucosyltransferase 2)

Identity

Alias_namesUGCGL2
UDP-glucose ceramide glucosyltransferase-like 2
Alias_symbol (synonym)FLJ11485
HUGT2
FLJ10873
MGC150689
MGC87276
MGC117360
Other aliasUGT2
HGNC (Hugo) UGGT2
LocusID (NCBI) 55757
Atlas_Id 54749
Location 13q32.1  [Link to chromosome band 13q32]
Location_base_pair Starts at 95801581 and ends at 96053482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RUNX1 (21q22.12) / UGGT2 (13q32.1)UGGT2 (13q32.1) / ANKRD16 (10p15.1)UGGT2 (13q32.1) / ARFGEF2 (20q13.13)
UGGT2 (13q32.1) / COL4A1 (13q34)UGGT2 (13q32.1) / SLC26A2 (5q32)UGGT2 (13q32.1) / UGGT2 (13q32.1)
UGGT2 13q32.1 / ANKRD16 10p15.1UGGT2 13q32.1 / COL4A1 13q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UGGT2   15664
Cards
Entrez_Gene (NCBI)UGGT2  55757  UDP-glucose glycoprotein glucosyltransferase 2
AliasesHUGT2; UGCGL2; UGT2
GeneCards (Weizmann)UGGT2
Ensembl hg19 (Hinxton)ENSG00000102595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102595 [Gene_View]  chr13:95801581-96053482 [Contig_View]  UGGT2 [Vega]
ICGC DataPortalENSG00000102595
TCGA cBioPortalUGGT2
AceView (NCBI)UGGT2
Genatlas (Paris)UGGT2
WikiGenes55757
SOURCE (Princeton)UGGT2
Genetics Home Reference (NIH)UGGT2
Genomic and cartography
GoldenPath hg38 (UCSC)UGGT2  -     chr13:95801581-96053482 -  13q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UGGT2  -     13q32.1   [Description]    (hg19-Feb_2009)
EnsemblUGGT2 - 13q32.1 [CytoView hg19]  UGGT2 - 13q32.1 [CytoView hg38]
Mapping of homologs : NCBIUGGT2 [Mapview hg19]  UGGT2 [Mapview hg38]
OMIM605898   
Gene and transcription
Genbank (Entrez)AF227906 AF339770 AK001735 AK021547 AL133051
RefSeq transcript (Entrez)NM_020121
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UGGT2
Cluster EST : UnigeneHs.656444 [ NCBI ]
CGAP (NCI)Hs.656444
Alternative Splicing GalleryENSG00000102595
Gene ExpressionUGGT2 [ NCBI-GEO ]   UGGT2 [ EBI - ARRAY_EXPRESS ]   UGGT2 [ SEEK ]   UGGT2 [ MEM ]
Gene Expression Viewer (FireBrowse)UGGT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55757
GTEX Portal (Tissue expression)UGGT2
Human Protein AtlasENSG00000102595-UGGT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYU1
Splice isoforms : SwissVarQ9NYU1
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ9NYU1
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans    UDP-g_GGtrans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)    UDP-g_GGTase (PF06427)   
Domain families : Pfam (NCBI)pfam01501    pfam06427   
Conserved Domain (NCBI)UGGT2
DMDM Disease mutations55757
Blocks (Seattle)UGGT2
SuperfamilyQ9NYU1
Human Protein Atlas [tissue]ENSG00000102595-UGGT2 [tissue]
Peptide AtlasQ9NYU1
HPRD12065
IPIIPI00024467   IPI00514350   IPI00552877   IPI01012192   IPI00844100   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYU1
IntAct (EBI)Q9NYU1
FunCoupENSG00000102595
BioGRIDUGGT2
STRING (EMBL)UGGT2
ZODIACUGGT2
Ontologies - Pathways
QuickGOQ9NYU1
Ontology : AmiGOUDP-glucose:glycoprotein glucosyltransferase activity  UDP-glucose:glycoprotein glucosyltransferase activity  protein binding  endoplasmic reticulum lumen  endoplasmic reticulum lumen  endoplasmic reticulum-Golgi intermediate compartment  protein glycosylation  endoplasmic reticulum quality control compartment  UDP-glucosylation  endoplasmic reticulum mannose trimming  
Ontology : EGO-EBIUDP-glucose:glycoprotein glucosyltransferase activity  UDP-glucose:glycoprotein glucosyltransferase activity  protein binding  endoplasmic reticulum lumen  endoplasmic reticulum lumen  endoplasmic reticulum-Golgi intermediate compartment  protein glycosylation  endoplasmic reticulum quality control compartment  UDP-glucosylation  endoplasmic reticulum mannose trimming  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkUGGT2
Atlas of Cancer Signalling NetworkUGGT2
Wikipedia pathwaysUGGT2
Orthology - Evolution
OrthoDB55757
GeneTree (enSembl)ENSG00000102595
Phylogenetic Trees/Animal Genes : TreeFamUGGT2
HOVERGENQ9NYU1
HOGENOMQ9NYU1
Homologs : HomoloGeneUGGT2
Homology/Alignments : Family Browser (UCSC)UGGT2
Gene fusions - Rearrangements
Fusion : MitelmanUGGT2/ANKRD16 [13q32.1/10p15.1]  
Fusion : MitelmanUGGT2/ARFGEF2 [13q32.1/20q13.13]  [t(13;20)(q32;q13)]  
Fusion : MitelmanUGGT2/COL4A1 [13q32.1/13q34]  [t(13;13)(q32;q34)]  
Fusion: TCGA_MDACCUGGT2 13q32.1 ANKRD16 10p15.1 PRAD
Fusion: TCGA_MDACCUGGT2 13q32.1 COL4A1 13q34 LUAD
Tumor Fusion PortalUGGT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUGGT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UGGT2
dbVarUGGT2
ClinVarUGGT2
1000_GenomesUGGT2 
Exome Variant ServerUGGT2
ExAC (Exome Aggregation Consortium)ENSG00000102595
GNOMAD BrowserENSG00000102595
Genetic variants : HAPMAP55757
Genomic Variants (DGV)UGGT2 [DGVbeta]
DECIPHERUGGT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUGGT2 
Mutations
ICGC Data PortalUGGT2 
TCGA Data PortalUGGT2 
Broad Tumor PortalUGGT2
OASIS PortalUGGT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUGGT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUGGT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UGGT2
DgiDB (Drug Gene Interaction Database)UGGT2
DoCM (Curated mutations)UGGT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UGGT2 (select a term)
intoGenUGGT2
Cancer3DUGGT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605898   
Orphanet
DisGeNETUGGT2
MedgenUGGT2
Genetic Testing Registry UGGT2
NextProtQ9NYU1 [Medical]
TSGene55757
GENETestsUGGT2
Target ValidationUGGT2
Huge Navigator UGGT2 [HugePedia]
snp3D : Map Gene to Disease55757
BioCentury BCIQUGGT2
ClinGenUGGT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55757
Chemical/Pharm GKB GenePA38015
Clinical trialUGGT2
Miscellaneous
canSAR (ICR)UGGT2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUGGT2
EVEXUGGT2
GoPubMedUGGT2
iHOPUGGT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:40:43 CET 2017

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