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UGT1A9 (UDP glucuronosyltransferase family 1 member A9)

Identity

Alias_namesUDP glycosyltransferase 1 family
Alias_symbol (synonym)HLUGP4
LUGP4
UGT1AI
Other aliasUDPGT
UDPGT 1-9
UGT-1I
UGT1-09
UGT1-9
UGT1.9
UGT1A9S
UGT1I
HGNC (Hugo) UGT1A9
LocusID (NCBI) 54600
Atlas_Id 42764
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 234580544 and ends at 234681951 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UGT1A9   12541
Cards
Entrez_Gene (NCBI)UGT1A9  54600  UDP glucuronosyltransferase family 1 member A9
AliasesHLUGP4; LUGP4; UDPGT; UDPGT; 
UGT-1I; UGT1-09; UGT1-9; UGT1.9; UGT1A9S; UGT1AI; UGT1I
GeneCards (Weizmann)UGT1A9
Ensembl hg19 (Hinxton)ENSG00000241119 [Gene_View]  chr2:234580544-234681951 [Contig_View]  UGT1A9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000241119 [Gene_View]  chr2:234580544-234681951 [Contig_View]  UGT1A9 [Vega]
ICGC DataPortalENSG00000241119
TCGA cBioPortalUGT1A9
AceView (NCBI)UGT1A9
Genatlas (Paris)UGT1A9
WikiGenes54600
SOURCE (Princeton)UGT1A9
Genetics Home Reference (NIH)UGT1A9
Genomic and cartography
GoldenPath hg19 (UCSC)UGT1A9  -     chr2:234580544-234681951 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UGT1A9  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblUGT1A9 - 2q37.1 [CytoView hg19]  UGT1A9 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIUGT1A9 [Mapview hg19]  UGT1A9 [Mapview hg38]
OMIM606434   
Gene and transcription
Genbank (Entrez)AF056188 AK313510 AY435144 BC043491 BC058844
RefSeq transcript (Entrez)NM_021027
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_002601 NT_005403 NW_004929306
Consensus coding sequences : CCDS (NCBI)UGT1A9
Cluster EST : UnigeneHs.554822 [ NCBI ]
CGAP (NCI)Hs.554822
Alternative Splicing GalleryENSG00000241119
Gene ExpressionUGT1A9 [ NCBI-GEO ]   UGT1A9 [ EBI - ARRAY_EXPRESS ]   UGT1A9 [ SEEK ]   UGT1A9 [ MEM ]
Gene Expression Viewer (FireBrowse)UGT1A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54600
GTEX Portal (Tissue expression)UGT1A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60656   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60656  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60656
Splice isoforms : SwissVarO60656
Catalytic activity : Enzyme2.4.1.17 [ Enzyme-Expasy ]   2.4.1.172.4.1.17 [ IntEnz-EBI ]   2.4.1.17 [ BRENDA ]   2.4.1.17 [ KEGG ]   
PhosPhoSitePlusO60656
Domaine pattern : Prosite (Expaxy)UDPGT (PS00375)   
Domains : Interpro (EBI)UDP_glucos_trans   
Domain families : Pfam (Sanger)UDPGT (PF00201)   
Domain families : Pfam (NCBI)pfam00201   
Conserved Domain (NCBI)UGT1A9
DMDM Disease mutations54600
Blocks (Seattle)UGT1A9
SuperfamilyO60656
Human Protein AtlasENSG00000241119
Peptide AtlasO60656
HPRD07073
IPIIPI00872012   
Protein Interaction databases
DIP (DOE-UCLA)O60656
IntAct (EBI)O60656
FunCoupENSG00000241119
BioGRIDUGT1A9
STRING (EMBL)UGT1A9
ZODIACUGT1A9
Ontologies - Pathways
QuickGOO60656
Ontology : AmiGOretinoic acid binding  enzyme inhibitor activity  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  glucuronosyltransferase activity  glucuronosyltransferase activity  integral component of membrane  drug metabolic process  enzyme binding  retinoic acid metabolic process  protein homodimerization activity  negative regulation of fatty acid metabolic process  protein heterodimerization activity  protein heterodimerization activity  flavone metabolic process  cellular glucuronidation  cellular glucuronidation  flavonoid glucuronidation  xenobiotic glucuronidation  extracellular exosome  negative regulation of glucuronosyltransferase activity  negative regulation of cellular glucuronidation  
Ontology : EGO-EBIretinoic acid binding  enzyme inhibitor activity  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum membrane  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  glucuronosyltransferase activity  glucuronosyltransferase activity  integral component of membrane  drug metabolic process  enzyme binding  retinoic acid metabolic process  protein homodimerization activity  negative regulation of fatty acid metabolic process  protein heterodimerization activity  protein heterodimerization activity  flavone metabolic process  cellular glucuronidation  cellular glucuronidation  flavonoid glucuronidation  xenobiotic glucuronidation  extracellular exosome  negative regulation of glucuronosyltransferase activity  negative regulation of cellular glucuronidation  
Pathways : KEGGPentose and glucuronate interconversions    Ascorbate and aldarate metabolism    Steroid hormone biosynthesis    Starch and sucrose metabolism    Retinol metabolism    Porphyrin and chlorophyll metabolism    Metabolism of xenobiotics by cytochrome P450    Drug metabolism - cytochrome P450    Drug metabolism - other enzymes    Chemical carcinogenesis   
NDEx NetworkUGT1A9
Atlas of Cancer Signalling NetworkUGT1A9
Wikipedia pathwaysUGT1A9
Orthology - Evolution
OrthoDB54600
GeneTree (enSembl)ENSG00000241119
Phylogenetic Trees/Animal Genes : TreeFamUGT1A9
HOVERGENO60656
HOGENOMO60656
Homologs : HomoloGeneUGT1A9
Homology/Alignments : Family Browser (UCSC)UGT1A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUGT1A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UGT1A9
dbVarUGT1A9
ClinVarUGT1A9
1000_GenomesUGT1A9 
Exome Variant ServerUGT1A9
ExAC (Exome Aggregation Consortium)UGT1A9 (select the gene name)
Genetic variants : HAPMAP54600
Genomic Variants (DGV)UGT1A9 [DGVbeta]
DECIPHER (Syndromes)2:234580544-234681951  ENSG00000241119
CONAN: Copy Number AnalysisUGT1A9 
Mutations
ICGC Data PortalUGT1A9 
TCGA Data PortalUGT1A9 
Broad Tumor PortalUGT1A9
OASIS PortalUGT1A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUGT1A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUGT1A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UGT1A9
DgiDB (Drug Gene Interaction Database)UGT1A9
DoCM (Curated mutations)UGT1A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UGT1A9 (select a term)
intoGenUGT1A9
Cancer3DUGT1A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606434   
Orphanet
MedgenUGT1A9
Genetic Testing Registry UGT1A9
NextProtO60656 [Medical]
TSGene54600
GENETestsUGT1A9
Huge Navigator UGT1A9 [HugePedia]
snp3D : Map Gene to Disease54600
BioCentury BCIQUGT1A9
ClinGenUGT1A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54600
Chemical/Pharm GKB GenePA419
Clinical trialUGT1A9
Miscellaneous
canSAR (ICR)UGT1A9 (select the gene name)
Probes
Litterature
PubMed158 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUGT1A9
EVEXUGT1A9
GoPubMedUGT1A9
iHOPUGT1A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:33:20 CET 2017

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