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UGT2B17 (UDP glucuronosyltransferase family 2 member B17)

Identity

Alias_namesUDP glycosyltransferase 2 family
Other aliasBMND12
UDPGT2B17
HGNC (Hugo) UGT2B17
LocusID (NCBI) 7367
Atlas_Id 45518
Location 4q13.2  [Link to chromosome band 4q13]
Location_base_pair Starts at 68537185 and ends at 68568527 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UGT2B17   12547
Cards
Entrez_Gene (NCBI)UGT2B17  7367  UDP glucuronosyltransferase family 2 member B17
AliasesBMND12; UDPGT2B17
GeneCards (Weizmann)UGT2B17
Ensembl hg19 (Hinxton)ENSG00000197888 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197888 [Gene_View]  chr4:68537185-68568527 [Contig_View]  UGT2B17 [Vega]
ICGC DataPortalENSG00000197888
TCGA cBioPortalUGT2B17
AceView (NCBI)UGT2B17
Genatlas (Paris)UGT2B17
WikiGenes7367
SOURCE (Princeton)UGT2B17
Genetics Home Reference (NIH)UGT2B17
Genomic and cartography
GoldenPath hg38 (UCSC)UGT2B17  -     chr4:68537185-68568527 -  4q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UGT2B17  -     4q13.2   [Description]    (hg19-Feb_2009)
EnsemblUGT2B17 - 4q13.2 [CytoView hg19]  UGT2B17 - 4q13.2 [CytoView hg38]
Mapping of homologs : NCBIUGT2B17 [Mapview hg19]  UGT2B17 [Mapview hg38]
OMIM601903   612560   
Gene and transcription
Genbank (Entrez)BC141517 U59209
RefSeq transcript (Entrez)NM_001077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UGT2B17
Cluster EST : UnigeneHs.575083 [ NCBI ]
CGAP (NCI)Hs.575083
Alternative Splicing GalleryENSG00000197888
Gene ExpressionUGT2B17 [ NCBI-GEO ]   UGT2B17 [ EBI - ARRAY_EXPRESS ]   UGT2B17 [ SEEK ]   UGT2B17 [ MEM ]
Gene Expression Viewer (FireBrowse)UGT2B17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7367
GTEX Portal (Tissue expression)UGT2B17
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75795   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75795  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75795
Splice isoforms : SwissVarO75795
Catalytic activity : Enzyme2.4.1.17 [ Enzyme-Expasy ]   2.4.1.172.4.1.17 [ IntEnz-EBI ]   2.4.1.17 [ BRENDA ]   2.4.1.17 [ KEGG ]   
PhosPhoSitePlusO75795
Domaine pattern : Prosite (Expaxy)UDPGT (PS00375)   
Domains : Interpro (EBI)UDP_glucos_trans   
Domain families : Pfam (Sanger)UDPGT (PF00201)   
Domain families : Pfam (NCBI)pfam00201   
Conserved Domain (NCBI)UGT2B17
DMDM Disease mutations7367
Blocks (Seattle)UGT2B17
SuperfamilyO75795
Human Protein AtlasENSG00000197888
Peptide AtlasO75795
HPRD03545
IPIIPI00026932   
Protein Interaction databases
DIP (DOE-UCLA)O75795
IntAct (EBI)O75795
FunCoupENSG00000197888
BioGRIDUGT2B17
STRING (EMBL)UGT2B17
ZODIACUGT2B17
Ontologies - Pathways
QuickGOO75795
Ontology : AmiGOretinoic acid binding  endoplasmic reticulum membrane  steroid metabolic process  glucuronosyltransferase activity  membrane  integral component of membrane  organelle membrane  intracellular membrane-bounded organelle  cellular glucuronidation  
Ontology : EGO-EBIretinoic acid binding  endoplasmic reticulum membrane  steroid metabolic process  glucuronosyltransferase activity  membrane  integral component of membrane  organelle membrane  intracellular membrane-bounded organelle  cellular glucuronidation  
Pathways : KEGG   
NDEx NetworkUGT2B17
Atlas of Cancer Signalling NetworkUGT2B17
Wikipedia pathwaysUGT2B17
Orthology - Evolution
OrthoDB7367
GeneTree (enSembl)ENSG00000197888
Phylogenetic Trees/Animal Genes : TreeFamUGT2B17
HOVERGENO75795
HOGENOMO75795
Homologs : HomoloGeneUGT2B17
Homology/Alignments : Family Browser (UCSC)UGT2B17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUGT2B17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UGT2B17
dbVarUGT2B17
ClinVarUGT2B17
1000_GenomesUGT2B17 
Exome Variant ServerUGT2B17
ExAC (Exome Aggregation Consortium)UGT2B17 (select the gene name)
Genetic variants : HAPMAP7367
Genomic Variants (DGV)UGT2B17 [DGVbeta]
DECIPHERUGT2B17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUGT2B17 
Mutations
ICGC Data PortalUGT2B17 
TCGA Data PortalUGT2B17 
Broad Tumor PortalUGT2B17
OASIS PortalUGT2B17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUGT2B17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUGT2B17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UGT2B17
DgiDB (Drug Gene Interaction Database)UGT2B17
DoCM (Curated mutations)UGT2B17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UGT2B17 (select a term)
intoGenUGT2B17
Cancer3DUGT2B17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601903    612560   
Orphanet
MedgenUGT2B17
Genetic Testing Registry UGT2B17
NextProtO75795 [Medical]
TSGene7367
GENETestsUGT2B17
Target ValidationUGT2B17
Huge Navigator UGT2B17 [HugePedia]
snp3D : Map Gene to Disease7367
BioCentury BCIQUGT2B17
ClinGenUGT2B17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7367
Chemical/Pharm GKB GenePA37189
Clinical trialUGT2B17
Miscellaneous
canSAR (ICR)UGT2B17 (select the gene name)
Probes
Litterature
PubMed74 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUGT2B17
EVEXUGT2B17
GoPubMedUGT2B17
iHOPUGT2B17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:54 CEST 2017

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