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UGT2B28 (UDP glucuronosyltransferase family 2 member B28)

Identity

Other alias-
HGNC (Hugo) UGT2B28
LocusID (NCBI) 54490
Atlas_Id 56693
Location 4q13.2  [Link to chromosome band 4q13]
Location_base_pair Starts at 69280499 and ends at 69295050 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UGT2B28   13479
Cards
Entrez_Gene (NCBI)UGT2B28  54490  UDP glucuronosyltransferase family 2 member B28
Aliases
GeneCards (Weizmann)UGT2B28
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:69280499-69295050 [Contig_View]  UGT2B28 [Vega]
TCGA cBioPortalUGT2B28
AceView (NCBI)UGT2B28
Genatlas (Paris)UGT2B28
WikiGenes54490
SOURCE (Princeton)UGT2B28
Genetics Home Reference (NIH)UGT2B28
Genomic and cartography
GoldenPath hg38 (UCSC)UGT2B28  -     chr4:69280499-69295050 +  4q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UGT2B28  -     4q13.2   [Description]    (hg19-Feb_2009)
EnsemblUGT2B28 - 4q13.2 [CytoView hg19]  UGT2B28 - 4q13.2 [CytoView hg38]
Mapping of homologs : NCBIUGT2B28 [Mapview hg19]  UGT2B28 [Mapview hg38]
OMIM606497   
Gene and transcription
Genbank (Entrez)AB451456 AF177272 AF177273 AF177274 BC156172
RefSeq transcript (Entrez)NM_001207004 NM_053039
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UGT2B28
Cluster EST : UnigeneHs.653154 [ NCBI ]
CGAP (NCI)Hs.653154
Gene ExpressionUGT2B28 [ NCBI-GEO ]   UGT2B28 [ EBI - ARRAY_EXPRESS ]   UGT2B28 [ SEEK ]   UGT2B28 [ MEM ]
Gene Expression Viewer (FireBrowse)UGT2B28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54490
GTEX Portal (Tissue expression)UGT2B28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY64
Splice isoforms : SwissVarQ9BY64
Catalytic activity : Enzyme2.4.1.17 [ Enzyme-Expasy ]   2.4.1.172.4.1.17 [ IntEnz-EBI ]   2.4.1.17 [ BRENDA ]   2.4.1.17 [ KEGG ]   
PhosPhoSitePlusQ9BY64
Domaine pattern : Prosite (Expaxy)UDPGT (PS00375)   
Domains : Interpro (EBI)UDP_glucos_trans   
Domain families : Pfam (Sanger)UDPGT (PF00201)   
Domain families : Pfam (NCBI)pfam00201   
Conserved Domain (NCBI)UGT2B28
DMDM Disease mutations54490
Blocks (Seattle)UGT2B28
SuperfamilyQ9BY64
Peptide AtlasQ9BY64
IPIIPI00000498   IPI00219784   IPI01017899   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY64
IntAct (EBI)Q9BY64
BioGRIDUGT2B28
STRING (EMBL)UGT2B28
ZODIACUGT2B28
Ontologies - Pathways
QuickGOQ9BY64
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  integral component of membrane  organelle membrane  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  integral component of membrane  organelle membrane  
Pathways : KEGG   
NDEx NetworkUGT2B28
Atlas of Cancer Signalling NetworkUGT2B28
Wikipedia pathwaysUGT2B28
Orthology - Evolution
OrthoDB54490
Phylogenetic Trees/Animal Genes : TreeFamUGT2B28
HOVERGENQ9BY64
HOGENOMQ9BY64
Homologs : HomoloGeneUGT2B28
Homology/Alignments : Family Browser (UCSC)UGT2B28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUGT2B28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UGT2B28
dbVarUGT2B28
ClinVarUGT2B28
1000_GenomesUGT2B28 
Exome Variant ServerUGT2B28
ExAC (Exome Aggregation Consortium)UGT2B28 (select the gene name)
Genetic variants : HAPMAP54490
Genomic Variants (DGV)UGT2B28 [DGVbeta]
DECIPHERUGT2B28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUGT2B28 
Mutations
ICGC Data PortalUGT2B28 
TCGA Data PortalUGT2B28 
Broad Tumor PortalUGT2B28
OASIS PortalUGT2B28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUGT2B28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUGT2B28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UGT2B28
DgiDB (Drug Gene Interaction Database)UGT2B28
DoCM (Curated mutations)UGT2B28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UGT2B28 (select a term)
intoGenUGT2B28
Cancer3DUGT2B28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606497   
Orphanet
MedgenUGT2B28
Genetic Testing Registry UGT2B28
NextProtQ9BY64 [Medical]
TSGene54490
GENETestsUGT2B28
Target ValidationUGT2B28
Huge Navigator UGT2B28 [HugePedia]
snp3D : Map Gene to Disease54490
BioCentury BCIQUGT2B28
ClinGenUGT2B28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54490
Chemical/Pharm GKB GenePA37779
Clinical trialUGT2B28
Miscellaneous
canSAR (ICR)UGT2B28 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUGT2B28
EVEXUGT2B28
GoPubMedUGT2B28
iHOPUGT2B28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:54 CEST 2017

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