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UHRF1BP1 (UHRF1 binding protein 1)

Identity

Alias_namesC6orf107
chromosome 6 open reading frame 107
Alias_symbol (synonym)FLJ20302
dJ349A12.1
ICBP90
Other alias
HGNC (Hugo) UHRF1BP1
LocusID (NCBI) 54887
Atlas_Id 54751
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 34792017 and ends at 34877514 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UHRF1BP1 (6p21.31) / EPYC (12q21.33)UHRF1BP1 (6p21.31) / OSBPL1A (18q11.2)UHRF1BP1 (6p21.31) / RIOK1 (6p24.3)
UHRF1BP1 (6p21.31) / UHRF1BP1 (6p21.31)UHRF1BP1 6p21.31 / EPYC 12q21.33UHRF1BP1 6p21.31 / OSBPL1A 18q11.2
UHRF1BP1 6p21.31 / RIOK1 6p24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(6;6)(p21;p24) UHRF1BP1/RIOK1
t(6;12)(p21;q21) UHRF1BP1/EPYC
t(6;18)(p21;q11) UHRF1BP1/OSBPL1A


External links

Nomenclature
HGNC (Hugo)UHRF1BP1   21216
Cards
Entrez_Gene (NCBI)UHRF1BP1  54887  UHRF1 binding protein 1
AliasesC6orf107; ICBP90; dJ349A12.1
GeneCards (Weizmann)UHRF1BP1
Ensembl hg19 (Hinxton)ENSG00000065060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065060 [Gene_View]  ENSG00000065060 [Sequence]  chr6:34792017-34877514 [Contig_View]  UHRF1BP1 [Vega]
ICGC DataPortalENSG00000065060
TCGA cBioPortalUHRF1BP1
AceView (NCBI)UHRF1BP1
Genatlas (Paris)UHRF1BP1
WikiGenes54887
SOURCE (Princeton)UHRF1BP1
Genetics Home Reference (NIH)UHRF1BP1
Genomic and cartography
GoldenPath hg38 (UCSC)UHRF1BP1  -     chr6:34792017-34877514 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UHRF1BP1  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblUHRF1BP1 - 6p21.31 [CytoView hg19]  UHRF1BP1 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIUHRF1BP1 [Mapview hg19]  UHRF1BP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA287944 AB126777 AK001228 AK122918 AK127691
RefSeq transcript (Entrez)NM_017754
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UHRF1BP1
Cluster EST : UnigeneHs.700656 [ NCBI ]
CGAP (NCI)Hs.700656
Alternative Splicing GalleryENSG00000065060
Gene ExpressionUHRF1BP1 [ NCBI-GEO ]   UHRF1BP1 [ EBI - ARRAY_EXPRESS ]   UHRF1BP1 [ SEEK ]   UHRF1BP1 [ MEM ]
Gene Expression Viewer (FireBrowse)UHRF1BP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54887
GTEX Portal (Tissue expression)UHRF1BP1
Human Protein AtlasENSG00000065060-UHRF1BP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6BDS2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6BDS2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6BDS2
Splice isoforms : SwissVarQ6BDS2
PhosPhoSitePlusQ6BDS2
Domains : Interpro (EBI)UHRF1BP1-like    VPS13_N   
Domain families : Pfam (Sanger)Chorein_N (PF12624)   
Domain families : Pfam (NCBI)pfam12624   
Conserved Domain (NCBI)UHRF1BP1
DMDM Disease mutations54887
Blocks (Seattle)UHRF1BP1
SuperfamilyQ6BDS2
Human Protein Atlas [tissue]ENSG00000065060-UHRF1BP1 [tissue]
Peptide AtlasQ6BDS2
HPRD12838
IPIIPI00465273   IPI00423436   IPI00939187   
Protein Interaction databases
DIP (DOE-UCLA)Q6BDS2
IntAct (EBI)Q6BDS2
FunCoupENSG00000065060
BioGRIDUHRF1BP1
STRING (EMBL)UHRF1BP1
ZODIACUHRF1BP1
Ontologies - Pathways
QuickGOQ6BDS2
Ontology : AmiGOprotein binding  identical protein binding  histone deacetylase binding  histone deacetylase binding  
Ontology : EGO-EBIprotein binding  identical protein binding  histone deacetylase binding  histone deacetylase binding  
NDEx NetworkUHRF1BP1
Atlas of Cancer Signalling NetworkUHRF1BP1
Wikipedia pathwaysUHRF1BP1
Orthology - Evolution
OrthoDB54887
GeneTree (enSembl)ENSG00000065060
Phylogenetic Trees/Animal Genes : TreeFamUHRF1BP1
HOVERGENQ6BDS2
HOGENOMQ6BDS2
Homologs : HomoloGeneUHRF1BP1
Homology/Alignments : Family Browser (UCSC)UHRF1BP1
Gene fusions - Rearrangements
Fusion : MitelmanUHRF1BP1/EPYC [6p21.31/12q21.33]  
Fusion : MitelmanUHRF1BP1/OSBPL1A [6p21.31/18q11.2]  [t(6;18)(p21;q11)]  
Fusion : MitelmanUHRF1BP1/RIOK1 [6p21.31/6p24.3]  [t(6;6)(p21;p24)]  
Fusion PortalUHRF1BP1 6p21.31 EPYC 12q21.33 GBM
Fusion PortalUHRF1BP1 6p21.31 OSBPL1A 18q11.2 LUSC
Fusion PortalUHRF1BP1 6p21.31 RIOK1 6p24.3 PRAD
Fusion : QuiverUHRF1BP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUHRF1BP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UHRF1BP1
dbVarUHRF1BP1
ClinVarUHRF1BP1
1000_GenomesUHRF1BP1 
Exome Variant ServerUHRF1BP1
ExAC (Exome Aggregation Consortium)ENSG00000065060
GNOMAD BrowserENSG00000065060
Varsome BrowserUHRF1BP1
Genetic variants : HAPMAP54887
Genomic Variants (DGV)UHRF1BP1 [DGVbeta]
DECIPHERUHRF1BP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUHRF1BP1 
Mutations
ICGC Data PortalUHRF1BP1 
TCGA Data PortalUHRF1BP1 
Broad Tumor PortalUHRF1BP1
OASIS PortalUHRF1BP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUHRF1BP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUHRF1BP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UHRF1BP1
DgiDB (Drug Gene Interaction Database)UHRF1BP1
DoCM (Curated mutations)UHRF1BP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UHRF1BP1 (select a term)
intoGenUHRF1BP1
Cancer3DUHRF1BP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUHRF1BP1
MedgenUHRF1BP1
Genetic Testing Registry UHRF1BP1
NextProtQ6BDS2 [Medical]
TSGene54887
GENETestsUHRF1BP1
Target ValidationUHRF1BP1
Huge Navigator UHRF1BP1 [HugePedia]
snp3D : Map Gene to Disease54887
BioCentury BCIQUHRF1BP1
ClinGenUHRF1BP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54887
Chemical/Pharm GKB GenePA162408530
Clinical trialUHRF1BP1
Miscellaneous
canSAR (ICR)UHRF1BP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUHRF1BP1
EVEXUHRF1BP1
GoPubMedUHRF1BP1
iHOPUHRF1BP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 12:00:33 CEST 2018

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