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ULBP1 (UL16 binding protein 1)

Identity

Alias_symbol (synonym)RAET1I
Other aliasN2DL-1
NKG2DL1
HGNC (Hugo) ULBP1
LocusID (NCBI) 80329
Atlas_Id 50936
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 150285110 and ends at 150294849 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ULBP1   14893
Cards
Entrez_Gene (NCBI)ULBP1  80329  UL16 binding protein 1
AliasesN2DL-1; NKG2DL1; RAET1I
GeneCards (Weizmann)ULBP1
Ensembl hg19 (Hinxton)ENSG00000111981 [Gene_View]  chr6:150285110-150294849 [Contig_View]  ULBP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000111981 [Gene_View]  chr6:150285110-150294849 [Contig_View]  ULBP1 [Vega]
ICGC DataPortalENSG00000111981
TCGA cBioPortalULBP1
AceView (NCBI)ULBP1
Genatlas (Paris)ULBP1
WikiGenes80329
SOURCE (Princeton)ULBP1
Genetics Home Reference (NIH)ULBP1
Genomic and cartography
GoldenPath hg19 (UCSC)ULBP1  -     chr6:150285110-150294849 +  6q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ULBP1  -     6q25.1   [Description]    (hg38-Dec_2013)
EnsemblULBP1 - 6q25.1 [CytoView hg19]  ULBP1 - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIULBP1 [Mapview hg19]  ULBP1 [Mapview hg38]
OMIM605697   
Gene and transcription
Genbank (Entrez)AB052907 AF304377 AF346416 AF346595 AF425265
RefSeq transcript (Entrez)NM_001317089 NM_025218
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)ULBP1
Cluster EST : UnigeneHs.653255 [ NCBI ]
CGAP (NCI)Hs.653255
Alternative Splicing GalleryENSG00000111981
Gene ExpressionULBP1 [ NCBI-GEO ]   ULBP1 [ EBI - ARRAY_EXPRESS ]   ULBP1 [ SEEK ]   ULBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ULBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80329
GTEX Portal (Tissue expression)ULBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZM6
Splice isoforms : SwissVarQ9BZM6
PhosPhoSitePlusQ9BZM6
Domains : Interpro (EBI)MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog    MHC_I_a_a1/a2   
Domain families : Pfam (Sanger)MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam00129   
Conserved Domain (NCBI)ULBP1
DMDM Disease mutations80329
Blocks (Seattle)ULBP1
SuperfamilyQ9BZM6
Human Protein AtlasENSG00000111981
Peptide AtlasQ9BZM6
HPRD09297
IPIIPI00018861   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZM6
IntAct (EBI)Q9BZM6
FunCoupENSG00000111981
BioGRIDULBP1
STRING (EMBL)ULBP1
ZODIACULBP1
Ontologies - Pathways
QuickGOQ9BZM6
Ontology : AmiGOantigen binding  endoplasmic reticulum  plasma membrane  antigen processing and presentation  natural killer cell activation  natural killer cell mediated cytotoxicity  anchored component of plasma membrane  natural killer cell lectin-like receptor binding  regulation of immune response  
Ontology : EGO-EBIantigen binding  endoplasmic reticulum  plasma membrane  antigen processing and presentation  natural killer cell activation  natural killer cell mediated cytotoxicity  anchored component of plasma membrane  natural killer cell lectin-like receptor binding  regulation of immune response  
Pathways : KEGGNatural killer cell mediated cytotoxicity   
NDEx NetworkULBP1
Atlas of Cancer Signalling NetworkULBP1
Wikipedia pathwaysULBP1
Orthology - Evolution
OrthoDB80329
GeneTree (enSembl)ENSG00000111981
Phylogenetic Trees/Animal Genes : TreeFamULBP1
HOVERGENQ9BZM6
HOGENOMQ9BZM6
Homologs : HomoloGeneULBP1
Homology/Alignments : Family Browser (UCSC)ULBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerULBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ULBP1
dbVarULBP1
ClinVarULBP1
1000_GenomesULBP1 
Exome Variant ServerULBP1
ExAC (Exome Aggregation Consortium)ULBP1 (select the gene name)
Genetic variants : HAPMAP80329
Genomic Variants (DGV)ULBP1 [DGVbeta]
DECIPHER (Syndromes)6:150285110-150294849  ENSG00000111981
CONAN: Copy Number AnalysisULBP1 
Mutations
ICGC Data PortalULBP1 
TCGA Data PortalULBP1 
Broad Tumor PortalULBP1
OASIS PortalULBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICULBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDULBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ULBP1
DgiDB (Drug Gene Interaction Database)ULBP1
DoCM (Curated mutations)ULBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ULBP1 (select a term)
intoGenULBP1
Cancer3DULBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605697   
Orphanet
MedgenULBP1
Genetic Testing Registry ULBP1
NextProtQ9BZM6 [Medical]
TSGene80329
GENETestsULBP1
Huge Navigator ULBP1 [HugePedia]
snp3D : Map Gene to Disease80329
BioCentury BCIQULBP1
ClinGenULBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80329
Chemical/Pharm GKB GenePA37915
Clinical trialULBP1
Miscellaneous
canSAR (ICR)ULBP1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineULBP1
EVEXULBP1
GoPubMedULBP1
iHOPULBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:20 CEST 2017

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