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ULBP3 (UL16 binding protein 3)

Identity

Alias_symbol (synonym)RAET1N
Other aliasN2DL-3
NKG2DL3
HGNC (Hugo) ULBP3
LocusID (NCBI) 79465
Atlas_Id 52222
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 150061046 and ends at 150069147 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ULBP3   14895
Cards
Entrez_Gene (NCBI)ULBP3  79465  UL16 binding protein 3
AliasesN2DL-3; NKG2DL3; RAET1N
GeneCards (Weizmann)ULBP3
Ensembl hg19 (Hinxton)ENSG00000131019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131019 [Gene_View]  chr6:150061046-150069147 [Contig_View]  ULBP3 [Vega]
ICGC DataPortalENSG00000131019
TCGA cBioPortalULBP3
AceView (NCBI)ULBP3
Genatlas (Paris)ULBP3
WikiGenes79465
SOURCE (Princeton)ULBP3
Genetics Home Reference (NIH)ULBP3
Genomic and cartography
GoldenPath hg38 (UCSC)ULBP3  -     chr6:150061046-150069147 -  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ULBP3  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblULBP3 - 6q25.1 [CytoView hg19]  ULBP3 - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIULBP3 [Mapview hg19]  ULBP3 [Mapview hg38]
OMIM605699   
Gene and transcription
Genbank (Entrez)AB052908 AF304379 AF346596 AI298332 AK297815
RefSeq transcript (Entrez)NM_024518
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ULBP3
Cluster EST : UnigeneHs.326556 [ NCBI ]
CGAP (NCI)Hs.326556
Alternative Splicing GalleryENSG00000131019
Gene ExpressionULBP3 [ NCBI-GEO ]   ULBP3 [ EBI - ARRAY_EXPRESS ]   ULBP3 [ SEEK ]   ULBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)ULBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79465
GTEX Portal (Tissue expression)ULBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZM4
Splice isoforms : SwissVarQ9BZM4
PhosPhoSitePlusQ9BZM4
Domains : Interpro (EBI)MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam00129   
Conserved Domain (NCBI)ULBP3
DMDM Disease mutations79465
Blocks (Seattle)ULBP3
PDB (SRS)1KCG   
PDB (PDBSum)1KCG   
PDB (IMB)1KCG   
PDB (RSDB)1KCG   
Structural Biology KnowledgeBase1KCG   
SCOP (Structural Classification of Proteins)1KCG   
CATH (Classification of proteins structures)1KCG   
SuperfamilyQ9BZM4
Human Protein AtlasENSG00000131019
Peptide AtlasQ9BZM4
HPRD16144
IPIIPI00001602   IPI00908522   IPI01016062   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZM4
IntAct (EBI)Q9BZM4
FunCoupENSG00000131019
BioGRIDULBP3
STRING (EMBL)ULBP3
ZODIACULBP3
Ontologies - Pathways
QuickGOQ9BZM4
Ontology : AmiGOantigen binding  plasma membrane  viral process  antigen processing and presentation  natural killer cell activation  natural killer cell mediated cytotoxicity  anchored component of plasma membrane  natural killer cell lectin-like receptor binding  regulation of immune response  
Ontology : EGO-EBIantigen binding  plasma membrane  viral process  antigen processing and presentation  natural killer cell activation  natural killer cell mediated cytotoxicity  anchored component of plasma membrane  natural killer cell lectin-like receptor binding  regulation of immune response  
Pathways : KEGGNatural killer cell mediated cytotoxicity   
NDEx NetworkULBP3
Atlas of Cancer Signalling NetworkULBP3
Wikipedia pathwaysULBP3
Orthology - Evolution
OrthoDB79465
GeneTree (enSembl)ENSG00000131019
Phylogenetic Trees/Animal Genes : TreeFamULBP3
HOVERGENQ9BZM4
HOGENOMQ9BZM4
Homologs : HomoloGeneULBP3
Homology/Alignments : Family Browser (UCSC)ULBP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerULBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ULBP3
dbVarULBP3
ClinVarULBP3
1000_GenomesULBP3 
Exome Variant ServerULBP3
ExAC (Exome Aggregation Consortium)ULBP3 (select the gene name)
Genetic variants : HAPMAP79465
Genomic Variants (DGV)ULBP3 [DGVbeta]
DECIPHERULBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisULBP3 
Mutations
ICGC Data PortalULBP3 
TCGA Data PortalULBP3 
Broad Tumor PortalULBP3
OASIS PortalULBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICULBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDULBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ULBP3
DgiDB (Drug Gene Interaction Database)ULBP3
DoCM (Curated mutations)ULBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ULBP3 (select a term)
intoGenULBP3
Cancer3DULBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605699   
Orphanet
MedgenULBP3
Genetic Testing Registry ULBP3
NextProtQ9BZM4 [Medical]
TSGene79465
GENETestsULBP3
Target ValidationULBP3
Huge Navigator ULBP3 [HugePedia]
snp3D : Map Gene to Disease79465
BioCentury BCIQULBP3
ClinGenULBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79465
Chemical/Pharm GKB GenePA37917
Clinical trialULBP3
Miscellaneous
canSAR (ICR)ULBP3 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineULBP3
EVEXULBP3
GoPubMedULBP3
iHOPULBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:37:25 CEST 2017

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