Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ULBP3 (UL16 binding protein 3)

Identity

Alias (NCBI)N2DL-3
NKG2DL3
RAET1N
HGNC (Hugo) ULBP3
HGNC Alias symbRAET1N
LocusID (NCBI) 79465
Atlas_Id 52222
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 150061053 and ends at 150069121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ULBP3   14895
Cards
Entrez_Gene (NCBI)ULBP3    UL16 binding protein 3
AliasesN2DL-3; NKG2DL3; RAET1N
GeneCards (Weizmann)ULBP3
Ensembl hg19 (Hinxton)ENSG00000131019 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131019 [Gene_View]  ENSG00000131019 [Sequence]  chr6:150061053-150069121 [Contig_View]  ULBP3 [Vega]
ICGC DataPortalENSG00000131019
TCGA cBioPortalULBP3
AceView (NCBI)ULBP3
Genatlas (Paris)ULBP3
SOURCE (Princeton)ULBP3
Genetics Home Reference (NIH)ULBP3
Genomic and cartography
GoldenPath hg38 (UCSC)ULBP3  -     chr6:150061053-150069121 -  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ULBP3  -     6q25.1   [Description]    (hg19-Feb_2009)
GoldenPathULBP3 - 6q25.1 [CytoView hg19]  ULBP3 - 6q25.1 [CytoView hg38]
ImmunoBaseENSG00000131019
genome Data Viewer NCBIULBP3 [Mapview hg19]  
OMIM605699   
Gene and transcription
Genbank (Entrez)AB052908 AF304379 AF346596 AI298332 AK297815
RefSeq transcript (Entrez)NM_024518
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ULBP3
Alternative Splicing GalleryENSG00000131019
Gene ExpressionULBP3 [ NCBI-GEO ]   ULBP3 [ EBI - ARRAY_EXPRESS ]   ULBP3 [ SEEK ]   ULBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)ULBP3 [ Firebrowse - Broad ]
GenevisibleExpression of ULBP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79465
GTEX Portal (Tissue expression)ULBP3
Human Protein AtlasENSG00000131019-ULBP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZM4
Splice isoforms : SwissVarQ9BZM4
PhosPhoSitePlusQ9BZM4
Domains : Interpro (EBI)MHC_I-like_Ag-recog    MHC_I-like_Ag-recog_sf    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)MHC_I (PF00129)   
Domain families : Pfam (NCBI)pfam00129   
Conserved Domain (NCBI)ULBP3
Blocks (Seattle)ULBP3
PDB (RSDB)1KCG   
PDB Europe1KCG   
PDB (PDBSum)1KCG   
PDB (IMB)1KCG   
Structural Biology KnowledgeBase1KCG   
SCOP (Structural Classification of Proteins)1KCG   
CATH (Classification of proteins structures)1KCG   
SuperfamilyQ9BZM4
Human Protein Atlas [tissue]ENSG00000131019-ULBP3 [tissue]
Peptide AtlasQ9BZM4
HPRD16144
IPIIPI00001602   IPI00908522   IPI01016062   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZM4
IntAct (EBI)Q9BZM4
BioGRIDULBP3
STRING (EMBL)ULBP3
ZODIACULBP3
Ontologies - Pathways
QuickGOQ9BZM4
Ontology : AmiGOprotein binding  extracellular space  plasma membrane  plasma membrane  immune response  external side of plasma membrane  viral process  natural killer cell activation  natural killer cell mediated cytotoxicity  anchored component of plasma membrane  natural killer cell lectin-like receptor binding  regulation of immune response  
Ontology : EGO-EBIprotein binding  extracellular space  plasma membrane  plasma membrane  immune response  external side of plasma membrane  viral process  natural killer cell activation  natural killer cell mediated cytotoxicity  anchored component of plasma membrane  natural killer cell lectin-like receptor binding  regulation of immune response  
Pathways : KEGGNatural killer cell mediated cytotoxicity   
NDEx NetworkULBP3
Atlas of Cancer Signalling NetworkULBP3
Wikipedia pathwaysULBP3
Orthology - Evolution
OrthoDB79465
GeneTree (enSembl)ENSG00000131019
Phylogenetic Trees/Animal Genes : TreeFamULBP3
HOGENOMQ9BZM4
Homologs : HomoloGeneULBP3
Homology/Alignments : Family Browser (UCSC)ULBP3
Gene fusions - Rearrangements
Fusion : QuiverULBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerULBP3 [hg38]
dbVarULBP3
ClinVarULBP3
MonarchULBP3
1000_GenomesULBP3 
Exome Variant ServerULBP3
GNOMAD BrowserENSG00000131019
Varsome BrowserULBP3
Genomic Variants (DGV)ULBP3 [DGVbeta]
DECIPHERULBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisULBP3 
Mutations
ICGC Data PortalULBP3 
TCGA Data PortalULBP3 
Broad Tumor PortalULBP3
OASIS PortalULBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICULBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DULBP3
Mutations and Diseases : HGMDULBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ULBP3
DgiDB (Drug Gene Interaction Database)ULBP3
DoCM (Curated mutations)ULBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ULBP3 (select a term)
intoGenULBP3
Cancer3DULBP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605699   
Orphanet
DisGeNETULBP3
MedgenULBP3
Genetic Testing Registry ULBP3
NextProtQ9BZM4 [Medical]
GENETestsULBP3
Target ValidationULBP3
Huge Navigator ULBP3 [HugePedia]
ClinGenULBP3
Clinical trials, drugs, therapy
MyCancerGenomeULBP3
Protein Interactions : CTD
Pharm GKB GenePA37917
Clinical trialULBP3
Miscellaneous
canSAR (ICR)ULBP3 (select the gene name)
HarmonizomeULBP3
DataMed IndexULBP3
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXULBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 21:15:53 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.