Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UMODL1 (uromodulin like 1)

Identity

Alias (NCBI)-
HGNC (Hugo) UMODL1
HGNC Alias nameolfactorin
LocusID (NCBI) 89766
Atlas_Id 75480
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 42071317 and ends at 42142995 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAMTA1 (1p36.31) / UMODL1 (21q22.3)NUBP1 (16p13.13) / UMODL1 (21q22.3)PRDM16 (1p36.32) / UMODL1 (21q22.3)
UMODL1 (21q22.3) / CAMTA1 (1p36.31)UMODL1 (21q22.3) / PRDM16 (1p36.32)UMODL1 (21q22.3) / WRB (21q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UMODL1   12560
Cards
Entrez_Gene (NCBI)UMODL1    uromodulin like 1
Aliases
GeneCards (Weizmann)UMODL1
Ensembl hg19 (Hinxton)ENSG00000177398 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177398 [Gene_View]  ENSG00000177398 [Sequence]  chr21:42071317-42142995 [Contig_View]  UMODL1 [Vega]
ICGC DataPortalENSG00000177398
TCGA cBioPortalUMODL1
AceView (NCBI)UMODL1
Genatlas (Paris)UMODL1
SOURCE (Princeton)UMODL1
Genetics Home Reference (NIH)UMODL1
Genomic and cartography
GoldenPath hg38 (UCSC)UMODL1  -     chr21:42071317-42142995 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UMODL1  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathUMODL1 - 21q22.3 [CytoView hg19]  UMODL1 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000177398
Genome Data Viewer NCBIUMODL1 [Mapview hg19]  
OMIM613859   
Gene and transcription
Genbank (Entrez)AB051810 AB051811 AB096965 AB096966 AB096967
RefSeq transcript (Entrez)NM_001004416 NM_001199527 NM_001199528 NM_173568
Consensus coding sequences : CCDS (NCBI)UMODL1
Gene ExpressionUMODL1 [ NCBI-GEO ]   UMODL1 [ EBI - ARRAY_EXPRESS ]   UMODL1 [ SEEK ]   UMODL1 [ MEM ]
Gene Expression Viewer (FireBrowse)UMODL1 [ Firebrowse - Broad ]
GenevisibleExpression of UMODL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89766
GTEX Portal (Tissue expression)UMODL1
Human Protein AtlasENSG00000177398-UMODL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5DID0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5DID0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5DID0
PhosPhoSitePlusQ5DID0
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_3 (PS50026)    EGF_CA (PS01187)    EMI (PS51041)    FN3 (PS50853)    SEA (PS50024)    WAP (PS51390)    ZP_2 (PS51034)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Elafin-like_sf    EMI_domain    FN3_dom    FN3_sf    Growth_fac_rcpt_cys_sf    Ig-like_fold    SEA_dom    WAP_dom    ZP_dom   
Domain families : Pfam (Sanger)EGF_CA (PF07645)    SEA (PF01390)    WAP (PF00095)    Zona_pellucida (PF00100)   
Domain families : Pfam (NCBI)pfam07645    pfam01390    pfam00095    pfam00100   
Domain families : Smart (EMBL)EGF_CA (SM00179)  FN3 (SM00060)  WAP (SM00217)  ZP (SM00241)  
Conserved Domain (NCBI)UMODL1
SuperfamilyQ5DID0
AlphaFold pdb e-kbQ5DID0   
Human Protein Atlas [tissue]ENSG00000177398-UMODL1 [tissue]
HPRD08775
Protein Interaction databases
DIP (DOE-UCLA)Q5DID0
IntAct (EBI)Q5DID0
BioGRIDUMODL1
STRING (EMBL)UMODL1
ZODIACUMODL1
Ontologies - Pathways
QuickGOQ5DID0
Ontology : AmiGOextracellular matrix structural constituent  calcium ion binding  extracellular space  cytoplasm  single fertilization  external side of plasma membrane  cell surface  regulation of gene expression  integral component of membrane  apical plasma membrane  peptidase inhibitor activity  regulation of apoptotic process  multicellular organismal reproductive process  regulation of peptidase activity  adipose tissue development  cellular response to gonadotropin-releasing hormone  neutrophil migration  regulation of ovarian follicle development  
Ontology : EGO-EBIextracellular matrix structural constituent  calcium ion binding  extracellular space  cytoplasm  single fertilization  external side of plasma membrane  cell surface  regulation of gene expression  integral component of membrane  apical plasma membrane  peptidase inhibitor activity  regulation of apoptotic process  multicellular organismal reproductive process  regulation of peptidase activity  adipose tissue development  cellular response to gonadotropin-releasing hormone  neutrophil migration  regulation of ovarian follicle development  
NDEx NetworkUMODL1
Atlas of Cancer Signalling NetworkUMODL1
Wikipedia pathwaysUMODL1
Orthology - Evolution
OrthoDB89766
GeneTree (enSembl)ENSG00000177398
Phylogenetic Trees/Animal Genes : TreeFamUMODL1
Homologs : HomoloGeneUMODL1
Homology/Alignments : Family Browser (UCSC)UMODL1
Gene fusions - Rearrangements
Fusion : QuiverUMODL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUMODL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UMODL1
dbVarUMODL1
ClinVarUMODL1
MonarchUMODL1
1000_GenomesUMODL1 
Exome Variant ServerUMODL1
GNOMAD BrowserENSG00000177398
Varsome BrowserUMODL1
ACMGUMODL1 variants
VarityQ5DID0
Genomic Variants (DGV)UMODL1 [DGVbeta]
DECIPHERUMODL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUMODL1 
Mutations
ICGC Data PortalUMODL1 
TCGA Data PortalUMODL1 
Broad Tumor PortalUMODL1
OASIS PortalUMODL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUMODL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUMODL1
Mutations and Diseases : HGMDUMODL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUMODL1
DgiDB (Drug Gene Interaction Database)UMODL1
DoCM (Curated mutations)UMODL1
CIViC (Clinical Interpretations of Variants in Cancer)UMODL1
Cancer3DUMODL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613859   
Orphanet
DisGeNETUMODL1
MedgenUMODL1
Genetic Testing Registry UMODL1
NextProtQ5DID0 [Medical]
GENETestsUMODL1
Target ValidationUMODL1
Huge Navigator UMODL1 [HugePedia]
ClinGenUMODL1
Clinical trials, drugs, therapy
MyCancerGenomeUMODL1
Protein Interactions : CTDUMODL1
Pharm GKB GenePA37200
PharosQ5DID0
Clinical trialUMODL1
Miscellaneous
canSAR (ICR)UMODL1
HarmonizomeUMODL1
DataMed IndexUMODL1
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUMODL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:51 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.