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UMODL1 (uromodulin like 1)

Identity

Other alias-
HGNC (Hugo) UMODL1
LocusID (NCBI) 89766
Atlas_Id 75480
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 42071317 and ends at 42142995 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMTA1 (1p36.31) / UMODL1 (21q22.3)NUBP1 (16p13.13) / UMODL1 (21q22.3)PRDM16 (1p36.32) / UMODL1 (21q22.3)
UMODL1 (21q22.3) / CAMTA1 (1p36.31)UMODL1 (21q22.3) / PRDM16 (1p36.32)UMODL1 (21q22.3) / WRB (21q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UMODL1   12560
Cards
Entrez_Gene (NCBI)UMODL1  89766  uromodulin like 1
Aliases
GeneCards (Weizmann)UMODL1
Ensembl hg19 (Hinxton)ENSG00000177398 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177398 [Gene_View]  chr21:42071317-42142995 [Contig_View]  UMODL1 [Vega]
ICGC DataPortalENSG00000177398
TCGA cBioPortalUMODL1
AceView (NCBI)UMODL1
Genatlas (Paris)UMODL1
WikiGenes89766
SOURCE (Princeton)UMODL1
Genetics Home Reference (NIH)UMODL1
Genomic and cartography
GoldenPath hg38 (UCSC)UMODL1  -     chr21:42071317-42142995 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UMODL1  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblUMODL1 - 21q22.3 [CytoView hg19]  UMODL1 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIUMODL1 [Mapview hg19]  UMODL1 [Mapview hg38]
OMIM613859   
Gene and transcription
Genbank (Entrez)AB051810 AB051811 AB096965 AB096966 AB096967
RefSeq transcript (Entrez)NM_001004416 NM_001199527 NM_001199528 NM_173568
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UMODL1
Cluster EST : UnigeneHs.242520 [ NCBI ]
CGAP (NCI)Hs.242520
Alternative Splicing GalleryENSG00000177398
Gene ExpressionUMODL1 [ NCBI-GEO ]   UMODL1 [ EBI - ARRAY_EXPRESS ]   UMODL1 [ SEEK ]   UMODL1 [ MEM ]
Gene Expression Viewer (FireBrowse)UMODL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89766
GTEX Portal (Tissue expression)UMODL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5DID0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5DID0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5DID0
Splice isoforms : SwissVarQ5DID0
PhosPhoSitePlusQ5DID0
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_3 (PS50026)    EGF_CA (PS01187)    EMI (PS51041)    FN3 (PS50853)    SEA (PS50024)    WAP (PS51390)    ZP_2 (PS51034)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    EMI_domain    FN3_dom    Growth_fac_rcpt_    Ig-like_fold    SEA_dom    WAP_dom    ZP_dom   
Domain families : Pfam (Sanger)EGF_CA (PF07645)    SEA (PF01390)    WAP (PF00095)    Zona_pellucida (PF00100)   
Domain families : Pfam (NCBI)pfam07645    pfam01390    pfam00095    pfam00100   
Domain families : Smart (EMBL)EGF_CA (SM00179)  FN3 (SM00060)  WAP (SM00217)  ZP (SM00241)  
Conserved Domain (NCBI)UMODL1
DMDM Disease mutations89766
Blocks (Seattle)UMODL1
SuperfamilyQ5DID0
Human Protein AtlasENSG00000177398
Peptide AtlasQ5DID0
HPRD08775
IPIIPI00738911   IPI00737401   IPI00166237   IPI00439926   IPI00438272   IPI00816244   IPI00438271   IPI00438270   IPI00945469   IPI00946023   IPI00945297   IPI00945484   
Protein Interaction databases
DIP (DOE-UCLA)Q5DID0
IntAct (EBI)Q5DID0
FunCoupENSG00000177398
BioGRIDUMODL1
STRING (EMBL)UMODL1
ZODIACUMODL1
Ontologies - Pathways
QuickGOQ5DID0
Ontology : AmiGOcalcium ion binding  extracellular space  cytoplasm  single fertilization  external side of plasma membrane  negative regulation of peptidase activity  regulation of gene expression  integral component of membrane  peptidase inhibitor activity  regulation of apoptotic process  multicellular organismal reproductive process  adipose tissue development  cellular response to gonadotropin-releasing hormone  regulation of ovarian follicle development  
Ontology : EGO-EBIcalcium ion binding  extracellular space  cytoplasm  single fertilization  external side of plasma membrane  negative regulation of peptidase activity  regulation of gene expression  integral component of membrane  peptidase inhibitor activity  regulation of apoptotic process  multicellular organismal reproductive process  adipose tissue development  cellular response to gonadotropin-releasing hormone  regulation of ovarian follicle development  
NDEx NetworkUMODL1
Atlas of Cancer Signalling NetworkUMODL1
Wikipedia pathwaysUMODL1
Orthology - Evolution
OrthoDB89766
GeneTree (enSembl)ENSG00000177398
Phylogenetic Trees/Animal Genes : TreeFamUMODL1
HOVERGENQ5DID0
HOGENOMQ5DID0
Homologs : HomoloGeneUMODL1
Homology/Alignments : Family Browser (UCSC)UMODL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUMODL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UMODL1
dbVarUMODL1
ClinVarUMODL1
1000_GenomesUMODL1 
Exome Variant ServerUMODL1
ExAC (Exome Aggregation Consortium)UMODL1 (select the gene name)
Genetic variants : HAPMAP89766
Genomic Variants (DGV)UMODL1 [DGVbeta]
DECIPHERUMODL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUMODL1 
Mutations
ICGC Data PortalUMODL1 
TCGA Data PortalUMODL1 
Broad Tumor PortalUMODL1
OASIS PortalUMODL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUMODL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUMODL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UMODL1
DgiDB (Drug Gene Interaction Database)UMODL1
DoCM (Curated mutations)UMODL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UMODL1 (select a term)
intoGenUMODL1
Cancer3DUMODL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613859   
Orphanet
MedgenUMODL1
Genetic Testing Registry UMODL1
NextProtQ5DID0 [Medical]
TSGene89766
GENETestsUMODL1
Target ValidationUMODL1
Huge Navigator UMODL1 [HugePedia]
snp3D : Map Gene to Disease89766
BioCentury BCIQUMODL1
ClinGenUMODL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89766
Chemical/Pharm GKB GenePA37200
Clinical trialUMODL1
Miscellaneous
canSAR (ICR)UMODL1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUMODL1
EVEXUMODL1
GoPubMedUMODL1
iHOPUMODL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:48:11 CEST 2017

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