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UNCX (UNC homeobox)

Identity

Alias_symbol (synonym)Uncx4.1
Other aliasUNCX4.1
HGNC (Hugo) UNCX
LocusID (NCBI) 340260
Atlas_Id 55989
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 1272654 and ends at 1276613 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UNCX   33194
Cards
Entrez_Gene (NCBI)UNCX  340260  UNC homeobox
AliasesUNCX4.1
GeneCards (Weizmann)UNCX
Ensembl hg19 (Hinxton)ENSG00000164853 [Gene_View]  chr7:1272654-1276613 [Contig_View]  UNCX [Vega]
Ensembl hg38 (Hinxton)ENSG00000164853 [Gene_View]  chr7:1272654-1276613 [Contig_View]  UNCX [Vega]
ICGC DataPortalENSG00000164853
TCGA cBioPortalUNCX
AceView (NCBI)UNCX
Genatlas (Paris)UNCX
WikiGenes340260
SOURCE (Princeton)UNCX
Genetics Home Reference (NIH)UNCX
Genomic and cartography
GoldenPath hg19 (UCSC)UNCX  -     chr7:1272654-1276613 +  7p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UNCX  -     7p22.3   [Description]    (hg38-Dec_2013)
EnsemblUNCX - 7p22.3 [CytoView hg19]  UNCX - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIUNCX [Mapview hg19]  UNCX [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080461
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UNCX
Cluster EST : UnigeneHs.232272 [ NCBI ]
CGAP (NCI)Hs.232272
Alternative Splicing GalleryENSG00000164853
Gene ExpressionUNCX [ NCBI-GEO ]   UNCX [ EBI - ARRAY_EXPRESS ]   UNCX [ SEEK ]   UNCX [ MEM ]
Gene Expression Viewer (FireBrowse)UNCX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340260
GTEX Portal (Tissue expression)UNCX
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJT0
Splice isoforms : SwissVarA6NJT0
PhosPhoSitePlusA6NJT0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeodomain-like   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)UNCX
DMDM Disease mutations340260
Blocks (Seattle)UNCX
SuperfamilyA6NJT0
Human Protein AtlasENSG00000164853
Peptide AtlasA6NJT0
IPIIPI00894170   
Protein Interaction databases
DIP (DOE-UCLA)A6NJT0
IntAct (EBI)A6NJT0
FunCoupENSG00000164853
BioGRIDUNCX
STRING (EMBL)UNCX
ZODIACUNCX
Ontologies - Pathways
QuickGOA6NJT0
Ontology : AmiGOcartilage condensation  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  pattern specification process  dorsal spinal cord development  olfactory bulb interneuron differentiation  common myeloid progenitor cell proliferation  sequence-specific DNA binding  regulation of cell differentiation  
Ontology : EGO-EBIcartilage condensation  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  pattern specification process  dorsal spinal cord development  olfactory bulb interneuron differentiation  common myeloid progenitor cell proliferation  sequence-specific DNA binding  regulation of cell differentiation  
NDEx NetworkUNCX
Atlas of Cancer Signalling NetworkUNCX
Wikipedia pathwaysUNCX
Orthology - Evolution
OrthoDB340260
GeneTree (enSembl)ENSG00000164853
Phylogenetic Trees/Animal Genes : TreeFamUNCX
HOVERGENA6NJT0
HOGENOMA6NJT0
Homologs : HomoloGeneUNCX
Homology/Alignments : Family Browser (UCSC)UNCX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUNCX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UNCX
dbVarUNCX
ClinVarUNCX
1000_GenomesUNCX 
Exome Variant ServerUNCX
ExAC (Exome Aggregation Consortium)UNCX (select the gene name)
Genetic variants : HAPMAP340260
Genomic Variants (DGV)UNCX [DGVbeta]
DECIPHER (Syndromes)7:1272654-1276613  ENSG00000164853
CONAN: Copy Number AnalysisUNCX 
Mutations
ICGC Data PortalUNCX 
TCGA Data PortalUNCX 
Broad Tumor PortalUNCX
OASIS PortalUNCX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUNCX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUNCX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UNCX
DgiDB (Drug Gene Interaction Database)UNCX
DoCM (Curated mutations)UNCX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UNCX (select a term)
intoGenUNCX
Cancer3DUNCX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUNCX
Genetic Testing Registry UNCX
NextProtA6NJT0 [Medical]
TSGene340260
GENETestsUNCX
Huge Navigator UNCX [HugePedia]
snp3D : Map Gene to Disease340260
BioCentury BCIQUNCX
ClinGenUNCX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340260
Chemical/Pharm GKB GenePA162408642
Clinical trialUNCX
Miscellaneous
canSAR (ICR)UNCX (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUNCX
EVEXUNCX
GoPubMedUNCX
iHOPUNCX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:24 CEST 2017

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