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UNK (unk zinc finger)

Identity

Alias (NCBI)UNKEMPT
ZC3H5
ZC3HDC5
HGNC (Hugo) UNK
HGNC Alias symbKIAA1753
HGNC Previous nameZC3HDC5
 ZC3H5
HGNC Previous namezinc finger CCCH-type domain containing 5
 zinc finger CCCH-type containing 5
 unkempt homolog (Drosophila)
 unk family zinc finger
LocusID (NCBI) 85451
Atlas_Id 54756
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75784806 and ends at 75825799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SERP1 (3q25.1) / UNK (17q25.1)TEN1 (17q25.1) / UNK (17q25.1)UNK (17q25.1) / AVIL (12q14.1)
UNK (17q25.1) / B4GALNT2 (17q21.32)UNK (17q25.1) / C17orf77 (17q25.1)UNK (17q25.1) / DPYD (1p21.3)
UNK (17q25.1) / FAM104A (17q25.1)UNK (17q25.1) / MYO15B (17q25.1)UNK (17q25.1) / NAF1 (4q32.2)
UNK (17q25.1) / PRKCA (17q24.2)UNK (17q25.1) / ZNF266 (19p13.2)UNK 17q25.1 / AVIL 12q14.1
UNK 17q25.1 / B4GALNT2 17q21.32UNK 17q25.1 / DPYD 1p21.3UNK 17q25.1 / NAF1 4q32.2
UNK 17q25.1 / PRKCA 17q24.2UNK 17q25.1 / ZNF266 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UNK   29369
Cards
Entrez_Gene (NCBI)UNK    unk zinc finger
AliasesUNKEMPT; ZC3H5; ZC3HDC5
GeneCards (Weizmann)UNK
Ensembl hg19 (Hinxton)ENSG00000132478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132478 [Gene_View]  ENSG00000132478 [Sequence]  chr17:75784806-75825799 [Contig_View]  UNK [Vega]
ICGC DataPortalENSG00000132478
TCGA cBioPortalUNK
AceView (NCBI)UNK
Genatlas (Paris)UNK
SOURCE (Princeton)UNK
Genetics Home Reference (NIH)UNK
Genomic and cartography
GoldenPath hg38 (UCSC)UNK  -     chr17:75784806-75825799 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UNK  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathUNK - 17q25.1 [CytoView hg19]  UNK - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000132478
Genome Data Viewer NCBIUNK [Mapview hg19]  
OMIM616375   
Gene and transcription
Genbank (Entrez)AB051540 AI290733 AK307289 BC033751 BC038802
RefSeq transcript (Entrez)NM_001080419
Consensus coding sequences : CCDS (NCBI)UNK
Gene ExpressionUNK [ NCBI-GEO ]   UNK [ EBI - ARRAY_EXPRESS ]   UNK [ SEEK ]   UNK [ MEM ]
Gene Expression Viewer (FireBrowse)UNK [ Firebrowse - Broad ]
GenevisibleExpression of UNK in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85451
GTEX Portal (Tissue expression)UNK
Human Protein AtlasENSG00000132478-UNK [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0B0
PhosPhoSitePlusQ9C0B0
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Unkempt_Znf    Znf_CCCH    Znf_CCCH_sf   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)    zf_CCCH_5 (PF18384)   
Domain families : Pfam (NCBI)pfam00642    pfam18384   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)UNK
SuperfamilyQ9C0B0
AlphaFold pdb e-kbQ9C0B0   
Human Protein Atlas [tissue]ENSG00000132478-UNK [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9C0B0
IntAct (EBI)Q9C0B0
BioGRIDUNK
STRING (EMBL)UNK
ZODIACUNK
Ontologies - Pathways
QuickGOQ9C0B0
Ontology : AmiGOin utero embryonic development  neuron migration  RNA binding  cytoplasm  polysome  metal ion binding  cell morphogenesis involved in neuron differentiation  cell morphogenesis involved in neuron differentiation  polysome binding  mRNA CDS binding  mRNA CDS binding  negative regulation of cytoplasmic translation  
Ontology : EGO-EBIin utero embryonic development  neuron migration  RNA binding  cytoplasm  polysome  metal ion binding  cell morphogenesis involved in neuron differentiation  cell morphogenesis involved in neuron differentiation  polysome binding  mRNA CDS binding  mRNA CDS binding  negative regulation of cytoplasmic translation  
NDEx NetworkUNK
Atlas of Cancer Signalling NetworkUNK
Wikipedia pathwaysUNK
Orthology - Evolution
OrthoDB85451
GeneTree (enSembl)ENSG00000132478
Phylogenetic Trees/Animal Genes : TreeFamUNK
Homologs : HomoloGeneUNK
Homology/Alignments : Family Browser (UCSC)UNK
Gene fusions - Rearrangements
Fusion : MitelmanUNK/AVIL [17q25.1/12q14.1]  
Fusion : MitelmanUNK/B4GALNT2 [17q25.1/17q21.32]  
Fusion : MitelmanUNK/DPYD [17q25.1/1p21.3]  
Fusion : MitelmanUNK/MYO15B [17q25.1/17q25.1]  
Fusion : MitelmanUNK/NAF1 [17q25.1/4q32.2]  
Fusion : MitelmanUNK/PRKCA [17q25.1/17q24.2]  
Fusion : MitelmanUNK/ZNF266 [17q25.1/19p13.2]  
Fusion : QuiverUNK
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUNK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UNK
dbVarUNK
ClinVarUNK
MonarchUNK
1000_GenomesUNK 
Exome Variant ServerUNK
GNOMAD BrowserENSG00000132478
Varsome BrowserUNK
ACMGUNK variants
VarityQ9C0B0
Genomic Variants (DGV)UNK [DGVbeta]
DECIPHERUNK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUNK 
Mutations
ICGC Data PortalUNK 
TCGA Data PortalUNK 
Broad Tumor PortalUNK
OASIS PortalUNK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUNK  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUNK
Mutations and Diseases : HGMDUNK
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUNK
DgiDB (Drug Gene Interaction Database)UNK
DoCM (Curated mutations)UNK
CIViC (Clinical Interpretations of Variants in Cancer)UNK
Cancer3DUNK
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616375   
Orphanet
DisGeNETUNK
MedgenUNK
Genetic Testing Registry UNK
NextProtQ9C0B0 [Medical]
GENETestsUNK
Target ValidationUNK
Huge Navigator UNK [HugePedia]
ClinGenUNK
Clinical trials, drugs, therapy
MyCancerGenomeUNK
Protein Interactions : CTDUNK
Pharm GKB GenePA162408651
PharosQ9C0B0
Clinical trialUNK
Miscellaneous
canSAR (ICR)UNK
HarmonizomeUNK
DataMed IndexUNK
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUNK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:30 CEST 2021

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