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UPF2 (UPF2 regulator of nonsense mediated mRNA decay)

Identity

Alias (NCBI)HUPF2
RENT2
smg-3
HGNC (Hugo) UPF2
HGNC Alias symbRENT2
DKFZP434D222
KIAA1408
smg-3
HGNC Alias namesmg-3 homolog, nonsense mediated mRNA decay factor (C. elegans)
LocusID (NCBI) 26019
Atlas_Id 75496
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11920022 and ends at 12043170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLASP1 (2q14.2) / UPF2 (10p14)ENY2 (8q23.1) / UPF2 (10p14)MIR100HG (11q24.1) / UPF2 (10p14)
PPP2R5C (14q32.31) / UPF2 (10p14)UPF2 (10p14) / GLUD1 (10q23.2)UPF2 (10p14) / LUM (12q21.33)
UPF2 (10p14) / MTAP (9p21.3)USP32 (17q23.1) / UPF2 (10p14)USP6NL (10p14) / UPF2 (10p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UPF2   17854
Cards
Entrez_Gene (NCBI)UPF2    UPF2 regulator of nonsense mediated mRNA decay
AliasesHUPF2; RENT2; smg-3
GeneCards (Weizmann)UPF2
Ensembl hg19 (Hinxton)ENSG00000151461 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151461 [Gene_View]  ENSG00000151461 [Sequence]  chr10:11920022-12043170 [Contig_View]  UPF2 [Vega]
ICGC DataPortalENSG00000151461
TCGA cBioPortalUPF2
AceView (NCBI)UPF2
Genatlas (Paris)UPF2
SOURCE (Princeton)UPF2
Genetics Home Reference (NIH)UPF2
Genomic and cartography
GoldenPath hg38 (UCSC)UPF2  -     chr10:11920022-12043170 -  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UPF2  -     10p14   [Description]    (hg19-Feb_2009)
GoldenPathUPF2 - 10p14 [CytoView hg19]  UPF2 - 10p14 [CytoView hg38]
ImmunoBaseENSG00000151461
Genome Data Viewer NCBIUPF2 [Mapview hg19]  
OMIM605529   
Gene and transcription
Genbank (Entrez)AB037829 AF301013 AF318574 AK000764 AK074375
RefSeq transcript (Entrez)NM_015542 NM_080599
Consensus coding sequences : CCDS (NCBI)UPF2
Gene ExpressionUPF2 [ NCBI-GEO ]   UPF2 [ EBI - ARRAY_EXPRESS ]   UPF2 [ SEEK ]   UPF2 [ MEM ]
Gene Expression Viewer (FireBrowse)UPF2 [ Firebrowse - Broad ]
GenevisibleExpression of UPF2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26019
GTEX Portal (Tissue expression)UPF2
Human Protein AtlasENSG00000151461-UPF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UPF2
Human Protein Atlas [tissue]ENSG00000151461-UPF2 [tissue]
HPRD10405
Protein Interaction databases
BioGRIDUPF2
STRING (EMBL)UPF2
ZODIACUPF2
Ontologies - Pathways
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUPF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:54 CEST 2021
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