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UPK1A (uroplakin 1A)

Identity

Alias_symbol (synonym)TSPAN21
Other aliasUP1A
UPIA
UPKA
HGNC (Hugo) UPK1A
LocusID (NCBI) 11045
Atlas_Id 45725
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36157418 and ends at 36169387 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UPK1A   12577
Cards
Entrez_Gene (NCBI)UPK1A  11045  uroplakin 1A
AliasesTSPAN21; UP1A; UPIA; UPKA
GeneCards (Weizmann)UPK1A
Ensembl hg19 (Hinxton)ENSG00000105668 [Gene_View]  chr19:36157418-36169387 [Contig_View]  UPK1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000105668 [Gene_View]  chr19:36157418-36169387 [Contig_View]  UPK1A [Vega]
ICGC DataPortalENSG00000105668
TCGA cBioPortalUPK1A
AceView (NCBI)UPK1A
Genatlas (Paris)UPK1A
WikiGenes11045
SOURCE (Princeton)UPK1A
Genetics Home Reference (NIH)UPK1A
Genomic and cartography
GoldenPath hg19 (UCSC)UPK1A  -     chr19:36157418-36169387 +  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UPK1A  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblUPK1A - 19q13.12 [CytoView hg19]  UPK1A - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIUPK1A [Mapview hg19]  UPK1A [Mapview hg38]
OMIM611557   
Gene and transcription
Genbank (Entrez)AA548647 AF085807 BC107097 BC107098 HY263470
RefSeq transcript (Entrez)NM_001281443 NM_007000
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)UPK1A
Cluster EST : UnigeneHs.159309 [ NCBI ]
CGAP (NCI)Hs.159309
Alternative Splicing GalleryENSG00000105668
Gene ExpressionUPK1A [ NCBI-GEO ]   UPK1A [ EBI - ARRAY_EXPRESS ]   UPK1A [ SEEK ]   UPK1A [ MEM ]
Gene Expression Viewer (FireBrowse)UPK1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11045
GTEX Portal (Tissue expression)UPK1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00322   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00322  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00322
Splice isoforms : SwissVarO00322
PhosPhoSitePlusO00322
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)UPK1A
DMDM Disease mutations11045
Blocks (Seattle)UPK1A
SuperfamilyO00322
Human Protein AtlasENSG00000105668
Peptide AtlasO00322
HPRD15624
IPIIPI00011279   IPI00654852   
Protein Interaction databases
DIP (DOE-UCLA)O00322
IntAct (EBI)O00322
FunCoupENSG00000105668
BioGRIDUPK1A
STRING (EMBL)UPK1A
ZODIACUPK1A
Ontologies - Pathways
QuickGOO00322
Ontology : AmiGOendoplasmic reticulum  plasma membrane  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  integral component of membrane  apical plasma membrane  epithelial cell differentiation  protein homodimerization activity  monosaccharide binding  protein oligomerization  extracellular exosome  
Ontology : EGO-EBIendoplasmic reticulum  plasma membrane  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  integral component of membrane  apical plasma membrane  epithelial cell differentiation  protein homodimerization activity  monosaccharide binding  protein oligomerization  extracellular exosome  
NDEx NetworkUPK1A
Atlas of Cancer Signalling NetworkUPK1A
Wikipedia pathwaysUPK1A
Orthology - Evolution
OrthoDB11045
GeneTree (enSembl)ENSG00000105668
Phylogenetic Trees/Animal Genes : TreeFamUPK1A
HOVERGENO00322
HOGENOMO00322
Homologs : HomoloGeneUPK1A
Homology/Alignments : Family Browser (UCSC)UPK1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUPK1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UPK1A
dbVarUPK1A
ClinVarUPK1A
1000_GenomesUPK1A 
Exome Variant ServerUPK1A
ExAC (Exome Aggregation Consortium)UPK1A (select the gene name)
Genetic variants : HAPMAP11045
Genomic Variants (DGV)UPK1A [DGVbeta]
DECIPHER (Syndromes)19:36157418-36169387  ENSG00000105668
CONAN: Copy Number AnalysisUPK1A 
Mutations
ICGC Data PortalUPK1A 
TCGA Data PortalUPK1A 
Broad Tumor PortalUPK1A
OASIS PortalUPK1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUPK1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUPK1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UPK1A
DgiDB (Drug Gene Interaction Database)UPK1A
DoCM (Curated mutations)UPK1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UPK1A (select a term)
intoGenUPK1A
Cancer3DUPK1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611557   
Orphanet
MedgenUPK1A
Genetic Testing Registry UPK1A
NextProtO00322 [Medical]
TSGene11045
GENETestsUPK1A
Huge Navigator UPK1A [HugePedia]
snp3D : Map Gene to Disease11045
BioCentury BCIQUPK1A
ClinGenUPK1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11045
Chemical/Pharm GKB GenePA37209
Clinical trialUPK1A
Miscellaneous
canSAR (ICR)UPK1A (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUPK1A
EVEXUPK1A
GoPubMedUPK1A
iHOPUPK1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:25 CEST 2017

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