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UPK1B (uroplakin 1B)

Identity

Alias (NCBI)TSPAN20
UPIB
UPK1
HGNC (Hugo) UPK1B
HGNC Alias symbTSPAN20
HGNC Previous nameUPK1
LocusID (NCBI) 7348
Atlas_Id 46485
Location 3q13.32  [Link to chromosome band 3q13]
Location_base_pair Starts at 119173598 and ends at 119205143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM127 (2q11.2) / UPK1B (3q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UPK1B   12578
Cards
Entrez_Gene (NCBI)UPK1B    uroplakin 1B
AliasesTSPAN20; UPIB; UPK1
GeneCards (Weizmann)UPK1B
Ensembl hg19 (Hinxton)ENSG00000114638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114638 [Gene_View]  ENSG00000114638 [Sequence]  chr3:119173598-119205143 [Contig_View]  UPK1B [Vega]
ICGC DataPortalENSG00000114638
TCGA cBioPortalUPK1B
AceView (NCBI)UPK1B
Genatlas (Paris)UPK1B
SOURCE (Princeton)UPK1B
Genetics Home Reference (NIH)UPK1B
Genomic and cartography
GoldenPath hg38 (UCSC)UPK1B  -     chr3:119173598-119205143 +  3q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UPK1B  -     3q13.32   [Description]    (hg19-Feb_2009)
GoldenPathUPK1B - 3q13.32 [CytoView hg19]  UPK1B - 3q13.32 [CytoView hg38]
ImmunoBaseENSG00000114638
Genome Data Viewer NCBIUPK1B [Mapview hg19]  
OMIM602380   
Gene and transcription
Genbank (Entrez)AB002155 AB015234 AF042331 AF082888 AK225868
RefSeq transcript (Entrez)NM_006952
Consensus coding sequences : CCDS (NCBI)UPK1B
Gene ExpressionUPK1B [ NCBI-GEO ]   UPK1B [ EBI - ARRAY_EXPRESS ]   UPK1B [ SEEK ]   UPK1B [ MEM ]
Gene Expression Viewer (FireBrowse)UPK1B [ Firebrowse - Broad ]
GenevisibleExpression of UPK1B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7348
GTEX Portal (Tissue expression)UPK1B
Human Protein AtlasENSG00000114638-UPK1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75841   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75841  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75841
PhosPhoSitePlusO75841
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2_sf    Uroplakin-1b   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)UPK1B
SuperfamilyO75841
AlphaFold pdb e-kbO75841   
Human Protein Atlas [tissue]ENSG00000114638-UPK1B [tissue]
HPRD03853
Protein Interaction databases
DIP (DOE-UCLA)O75841
IntAct (EBI)O75841
BioGRIDUPK1B
STRING (EMBL)UPK1B
ZODIACUPK1B
Ontologies - Pathways
QuickGOO75841
Ontology : AmiGOstructural molecule activity  protein binding  integral component of plasma membrane  response to bacterium  integral component of membrane  epithelial cell differentiation  extracellular exosome  apical plasma membrane urothelial plaque  
Ontology : EGO-EBIstructural molecule activity  protein binding  integral component of plasma membrane  response to bacterium  integral component of membrane  epithelial cell differentiation  extracellular exosome  apical plasma membrane urothelial plaque  
NDEx NetworkUPK1B
Atlas of Cancer Signalling NetworkUPK1B
Wikipedia pathwaysUPK1B
Orthology - Evolution
OrthoDB7348
GeneTree (enSembl)ENSG00000114638
Phylogenetic Trees/Animal Genes : TreeFamUPK1B
Homologs : HomoloGeneUPK1B
Homology/Alignments : Family Browser (UCSC)UPK1B
Gene fusions - Rearrangements
Fusion : QuiverUPK1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUPK1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UPK1B
dbVarUPK1B
ClinVarUPK1B
MonarchUPK1B
1000_GenomesUPK1B 
Exome Variant ServerUPK1B
GNOMAD BrowserENSG00000114638
Varsome BrowserUPK1B
ACMGUPK1B variants
VarityO75841
Genomic Variants (DGV)UPK1B [DGVbeta]
DECIPHERUPK1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUPK1B 
Mutations
ICGC Data PortalUPK1B 
TCGA Data PortalUPK1B 
Broad Tumor PortalUPK1B
OASIS PortalUPK1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUPK1B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUPK1B
Mutations and Diseases : HGMDUPK1B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUPK1B
DgiDB (Drug Gene Interaction Database)UPK1B
DoCM (Curated mutations)UPK1B
CIViC (Clinical Interpretations of Variants in Cancer)UPK1B
Cancer3DUPK1B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602380   
Orphanet
DisGeNETUPK1B
MedgenUPK1B
Genetic Testing Registry UPK1B
NextProtO75841 [Medical]
GENETestsUPK1B
Target ValidationUPK1B
Huge Navigator UPK1B [HugePedia]
ClinGenUPK1B
Clinical trials, drugs, therapy
MyCancerGenomeUPK1B
Protein Interactions : CTDUPK1B
Pharm GKB GenePA37210
PharosO75841
Clinical trialUPK1B
Miscellaneous
canSAR (ICR)UPK1B
HarmonizomeUPK1B
DataMed IndexUPK1B
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUPK1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:31 CEST 2021

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