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UPK1B (uroplakin 1B)

Identity

Alias_namesUPK1
Alias_symbol (synonym)TSPAN20
Other aliasUPIB
HGNC (Hugo) UPK1B
LocusID (NCBI) 7348
Atlas_Id 46485
Location 3q13.32  [Link to chromosome band 3q13]
Location_base_pair Starts at 118892425 and ends at 118924000 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM127 (2q11.2) / UPK1B (3q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UPK1B   12578
Cards
Entrez_Gene (NCBI)UPK1B  7348  uroplakin 1B
AliasesTSPAN20; UPIB; UPK1
GeneCards (Weizmann)UPK1B
Ensembl hg19 (Hinxton)ENSG00000114638 [Gene_View]  chr3:118892425-118924000 [Contig_View]  UPK1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000114638 [Gene_View]  chr3:118892425-118924000 [Contig_View]  UPK1B [Vega]
ICGC DataPortalENSG00000114638
TCGA cBioPortalUPK1B
AceView (NCBI)UPK1B
Genatlas (Paris)UPK1B
WikiGenes7348
SOURCE (Princeton)UPK1B
Genetics Home Reference (NIH)UPK1B
Genomic and cartography
GoldenPath hg19 (UCSC)UPK1B  -     chr3:118892425-118924000 +  3q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UPK1B  -     3q13.32   [Description]    (hg38-Dec_2013)
EnsemblUPK1B - 3q13.32 [CytoView hg19]  UPK1B - 3q13.32 [CytoView hg38]
Mapping of homologs : NCBIUPK1B [Mapview hg19]  UPK1B [Mapview hg38]
OMIM602380   
Gene and transcription
Genbank (Entrez)AB002155 AB015234 AF042331 AF082888 AK225868
RefSeq transcript (Entrez)NM_006952
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)UPK1B
Cluster EST : UnigeneHs.271580 [ NCBI ]
CGAP (NCI)Hs.271580
Alternative Splicing GalleryENSG00000114638
Gene ExpressionUPK1B [ NCBI-GEO ]   UPK1B [ EBI - ARRAY_EXPRESS ]   UPK1B [ SEEK ]   UPK1B [ MEM ]
Gene Expression Viewer (FireBrowse)UPK1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7348
GTEX Portal (Tissue expression)UPK1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75841   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75841  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75841
Splice isoforms : SwissVarO75841
PhosPhoSitePlusO75841
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)UPK1B
DMDM Disease mutations7348
Blocks (Seattle)UPK1B
SuperfamilyO75841
Human Protein AtlasENSG00000114638
Peptide AtlasO75841
HPRD03853
IPIIPI00215889   IPI00946628   IPI00947152   IPI00947003   IPI00946801   
Protein Interaction databases
DIP (DOE-UCLA)O75841
IntAct (EBI)O75841
FunCoupENSG00000114638
BioGRIDUPK1B
STRING (EMBL)UPK1B
ZODIACUPK1B
Ontologies - Pathways
QuickGOO75841
Ontology : AmiGOstructural molecule activity  integral component of plasma membrane  cell surface receptor signaling pathway  integral component of membrane  apical plasma membrane  epithelial cell differentiation  extracellular exosome  
Ontology : EGO-EBIstructural molecule activity  integral component of plasma membrane  cell surface receptor signaling pathway  integral component of membrane  apical plasma membrane  epithelial cell differentiation  extracellular exosome  
NDEx NetworkUPK1B
Atlas of Cancer Signalling NetworkUPK1B
Wikipedia pathwaysUPK1B
Orthology - Evolution
OrthoDB7348
GeneTree (enSembl)ENSG00000114638
Phylogenetic Trees/Animal Genes : TreeFamUPK1B
HOVERGENO75841
HOGENOMO75841
Homologs : HomoloGeneUPK1B
Homology/Alignments : Family Browser (UCSC)UPK1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUPK1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UPK1B
dbVarUPK1B
ClinVarUPK1B
1000_GenomesUPK1B 
Exome Variant ServerUPK1B
ExAC (Exome Aggregation Consortium)UPK1B (select the gene name)
Genetic variants : HAPMAP7348
Genomic Variants (DGV)UPK1B [DGVbeta]
DECIPHER (Syndromes)3:118892425-118924000  ENSG00000114638
CONAN: Copy Number AnalysisUPK1B 
Mutations
ICGC Data PortalUPK1B 
TCGA Data PortalUPK1B 
Broad Tumor PortalUPK1B
OASIS PortalUPK1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUPK1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUPK1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UPK1B
DgiDB (Drug Gene Interaction Database)UPK1B
DoCM (Curated mutations)UPK1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UPK1B (select a term)
intoGenUPK1B
Cancer3DUPK1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602380   
Orphanet
MedgenUPK1B
Genetic Testing Registry UPK1B
NextProtO75841 [Medical]
TSGene7348
GENETestsUPK1B
Huge Navigator UPK1B [HugePedia]
snp3D : Map Gene to Disease7348
BioCentury BCIQUPK1B
ClinGenUPK1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7348
Chemical/Pharm GKB GenePA37210
Clinical trialUPK1B
Miscellaneous
canSAR (ICR)UPK1B (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUPK1B
EVEXUPK1B
GoPubMedUPK1B
iHOPUPK1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:33:29 CET 2017

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