Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

UPK2 (uroplakin 2)

Identity

Alias (NCBI)UP2
UPII
HGNC (Hugo) UPK2
HGNC Alias symbUP2
UPII
MGC138598
HGNC Alias nameuroplakin II
 uroplakin-2
LocusID (NCBI) 7379
Atlas_Id 51556
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118956298 and ends at 118958559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UPK2   12579
Cards
Entrez_Gene (NCBI)UPK2    uroplakin 2
AliasesUP2; UPII
GeneCards (Weizmann)UPK2
Ensembl hg19 (Hinxton)ENSG00000110375 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110375 [Gene_View]  ENSG00000110375 [Sequence]  chr11:118956298-118958559 [Contig_View]  UPK2 [Vega]
ICGC DataPortalENSG00000110375
TCGA cBioPortalUPK2
AceView (NCBI)UPK2
Genatlas (Paris)UPK2
SOURCE (Princeton)UPK2
Genetics Home Reference (NIH)UPK2
Genomic and cartography
GoldenPath hg38 (UCSC)UPK2  -     chr11:118956298-118958559 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UPK2  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathUPK2 - 11q23.3 [CytoView hg19]  UPK2 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000110375
genome Data Viewer NCBIUPK2 [Mapview hg19]  
OMIM611558   
Gene and transcription
Genbank (Entrez)AB009454 AF000562 AY455312 BC113900 CD556028
RefSeq transcript (Entrez)NM_006760
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UPK2
Alternative Splicing GalleryENSG00000110375
Gene ExpressionUPK2 [ NCBI-GEO ]   UPK2 [ EBI - ARRAY_EXPRESS ]   UPK2 [ SEEK ]   UPK2 [ MEM ]
Gene Expression Viewer (FireBrowse)UPK2 [ Firebrowse - Broad ]
GenevisibleExpression of UPK2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7379
GTEX Portal (Tissue expression)UPK2
Human Protein AtlasENSG00000110375-UPK2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00526   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00526  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00526
Splice isoforms : SwissVarO00526
PhosPhoSitePlusO00526
Domains : Interpro (EBI)Uroplakin-2   
Domain families : Pfam (Sanger)Uroplakin_II (PF07353)   
Domain families : Pfam (NCBI)pfam07353   
Conserved Domain (NCBI)UPK2
Blocks (Seattle)UPK2
SuperfamilyO00526
Human Protein Atlas [tissue]ENSG00000110375-UPK2 [tissue]
Peptide AtlasO00526
HPRD10295
IPIIPI00012113   IPI00985312   
Protein Interaction databases
DIP (DOE-UCLA)O00526
IntAct (EBI)O00526
BioGRIDUPK2
STRING (EMBL)UPK2
ZODIACUPK2
Ontologies - Pathways
QuickGOO00526
Ontology : AmiGOprotein binding  integral component of plasma membrane  multicellular organism development  apical plasma membrane  epithelial cell differentiation  epithelial cell differentiation  extracellular exosome  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  multicellular organism development  apical plasma membrane  epithelial cell differentiation  epithelial cell differentiation  extracellular exosome  
NDEx NetworkUPK2
Atlas of Cancer Signalling NetworkUPK2
Wikipedia pathwaysUPK2
Orthology - Evolution
OrthoDB7379
GeneTree (enSembl)ENSG00000110375
Phylogenetic Trees/Animal Genes : TreeFamUPK2
HOGENOMO00526
Homologs : HomoloGeneUPK2
Homology/Alignments : Family Browser (UCSC)UPK2
Gene fusions - Rearrangements
Fusion : QuiverUPK2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUPK2 [hg38]
dbVarUPK2
ClinVarUPK2
MonarchUPK2
1000_GenomesUPK2 
Exome Variant ServerUPK2
GNOMAD BrowserENSG00000110375
Varsome BrowserUPK2
Genomic Variants (DGV)UPK2 [DGVbeta]
DECIPHERUPK2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUPK2 
Mutations
ICGC Data PortalUPK2 
TCGA Data PortalUPK2 
Broad Tumor PortalUPK2
OASIS PortalUPK2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUPK2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUPK2
Mutations and Diseases : HGMDUPK2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UPK2
DgiDB (Drug Gene Interaction Database)UPK2
DoCM (Curated mutations)UPK2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UPK2 (select a term)
intoGenUPK2
Cancer3DUPK2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611558   
Orphanet
DisGeNETUPK2
MedgenUPK2
Genetic Testing Registry UPK2
NextProtO00526 [Medical]
GENETestsUPK2
Target ValidationUPK2
Huge Navigator UPK2 [HugePedia]
ClinGenUPK2
Clinical trials, drugs, therapy
MyCancerGenomeUPK2
Protein Interactions : CTD
Pharm GKB GenePA37211
PharosO00526
Clinical trialUPK2
Miscellaneous
canSAR (ICR)UPK2 (select the gene name)
HarmonizomeUPK2
DataMed IndexUPK2
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUPK2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:43:34 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.