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UPK3B (uroplakin 3B)

Identity

Alias_symbol (synonym)MGC10902
p35
UPIIIb
FLJ32198
Other aliasP35
UP3B
UPIIIB
HGNC (Hugo) UPK3B
LocusID (NCBI) 80761
Atlas_Id 43722
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 76510342 and ends at 76516521 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UPK3B   21444
Cards
Entrez_Gene (NCBI)UPK3B  80761  uroplakin 3B
AliasesP35; UP3B; UPIIIB
GeneCards (Weizmann)UPK3B
Ensembl hg19 (Hinxton)ENSG00000243566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243566 [Gene_View]  chr7:76510342-76516521 [Contig_View]  UPK3B [Vega]
ICGC DataPortalENSG00000243566
TCGA cBioPortalUPK3B
AceView (NCBI)UPK3B
Genatlas (Paris)UPK3B
WikiGenes80761
SOURCE (Princeton)UPK3B
Genetics Home Reference (NIH)UPK3B
Genomic and cartography
GoldenPath hg38 (UCSC)UPK3B  -     chr7:76510342-76516521 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UPK3B  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblUPK3B - 7q11.23 [CytoView hg19]  UPK3B - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIUPK3B [Mapview hg19]  UPK3B [Mapview hg38]
OMIM611887   
Gene and transcription
Genbank (Entrez)AK056760 AK290096 AY233462 BC004304 BE615406
RefSeq transcript (Entrez)NM_001347684 NM_030570 NM_182683 NM_182684
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_187561
Consensus coding sequences : CCDS (NCBI)UPK3B
Cluster EST : UnigeneHs.488861 [ NCBI ]
CGAP (NCI)Hs.488861
Alternative Splicing GalleryENSG00000243566
Gene ExpressionUPK3B [ NCBI-GEO ]   UPK3B [ EBI - ARRAY_EXPRESS ]   UPK3B [ SEEK ]   UPK3B [ MEM ]
Gene Expression Viewer (FireBrowse)UPK3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80761
GTEX Portal (Tissue expression)UPK3B
Human Protein AtlasENSG00000243566-UPK3B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT76
Splice isoforms : SwissVarQ9BT76
PhosPhoSitePlusQ9BT76
Domains : Interpro (EBI)Uroplakin-3    Uroplakin-3b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UPK3B
DMDM Disease mutations80761
Blocks (Seattle)UPK3B
SuperfamilyQ9BT76
Human Protein Atlas [tissue]ENSG00000243566-UPK3B [tissue]
Peptide AtlasQ9BT76
HPRD15626
Protein Interaction databases
DIP (DOE-UCLA)Q9BT76
IntAct (EBI)Q9BT76
FunCoupENSG00000243566
BioGRIDUPK3B
STRING (EMBL)UPK3B
ZODIACUPK3B
Ontologies - Pathways
QuickGOQ9BT76
Ontology : AmiGOplasma membrane  negative regulation of gene expression  integral component of membrane  extracellular exosome  
Ontology : EGO-EBIplasma membrane  negative regulation of gene expression  integral component of membrane  extracellular exosome  
NDEx NetworkUPK3B
Atlas of Cancer Signalling NetworkUPK3B
Wikipedia pathwaysUPK3B
Orthology - Evolution
OrthoDB80761
GeneTree (enSembl)ENSG00000243566
Phylogenetic Trees/Animal Genes : TreeFamUPK3B
HOVERGENQ9BT76
HOGENOMQ9BT76
Homologs : HomoloGeneUPK3B
Homology/Alignments : Family Browser (UCSC)UPK3B
Gene fusions - Rearrangements
Tumor Fusion PortalUPK3B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUPK3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UPK3B
dbVarUPK3B
ClinVarUPK3B
1000_GenomesUPK3B 
Exome Variant ServerUPK3B
ExAC (Exome Aggregation Consortium)ENSG00000243566
GNOMAD BrowserENSG00000243566
Genetic variants : HAPMAP80761
Genomic Variants (DGV)UPK3B [DGVbeta]
DECIPHERUPK3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUPK3B 
Mutations
ICGC Data PortalUPK3B 
TCGA Data PortalUPK3B 
Broad Tumor PortalUPK3B
OASIS PortalUPK3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUPK3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUPK3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UPK3B
DgiDB (Drug Gene Interaction Database)UPK3B
DoCM (Curated mutations)UPK3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UPK3B (select a term)
intoGenUPK3B
Cancer3DUPK3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611887   
Orphanet
DisGeNETUPK3B
MedgenUPK3B
Genetic Testing Registry UPK3B
NextProtQ9BT76 [Medical]
TSGene80761
GENETestsUPK3B
Target ValidationUPK3B
Huge Navigator UPK3B [HugePedia]
snp3D : Map Gene to Disease80761
BioCentury BCIQUPK3B
ClinGenUPK3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80761
Clinical trialUPK3B
Miscellaneous
canSAR (ICR)UPK3B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUPK3B
EVEXUPK3B
GoPubMedUPK3B
iHOPUPK3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:40:55 CET 2017

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