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UPK3BL (uroplakin 3B-like)

Identity

Alias_symbol (synonym)UPLP
Other alias
HGNC (Hugo) UPK3BL
LocusID (NCBI) 100134938
Atlas_Id 75499
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102277472 and ends at 102283238 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UPK3BL   37278
Cards
Entrez_Gene (NCBI)UPK3BL  100134938  uroplakin 3B-like
AliasesUPLP
GeneCards (Weizmann)UPK3BL
Ensembl hg19 (Hinxton)ENSG00000267368 [Gene_View]  chr7:102277472-102283238 [Contig_View]  UPK3BL [Vega]
Ensembl hg38 (Hinxton)ENSG00000267368 [Gene_View]  chr7:102277472-102283238 [Contig_View]  UPK3BL [Vega]
ICGC DataPortalENSG00000267368
TCGA cBioPortalUPK3BL
AceView (NCBI)UPK3BL
Genatlas (Paris)UPK3BL
WikiGenes100134938
SOURCE (Princeton)UPK3BL
Genetics Home Reference (NIH)UPK3BL
Genomic and cartography
GoldenPath hg19 (UCSC)UPK3BL  -     chr7:102277472-102283238 -  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UPK3BL  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblUPK3BL - 7q22.1 [CytoView hg19]  UPK3BL - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIUPK3BL [Mapview hg19]  UPK3BL [Mapview hg38]
Gene and transcription
Genbank (Entrez)EU341824
RefSeq transcript (Entrez)NM_001114403
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)UPK3BL
Cluster EST : UnigeneHs.610255 [ NCBI ]
CGAP (NCI)Hs.610255
Alternative Splicing GalleryENSG00000267368
Gene ExpressionUPK3BL [ NCBI-GEO ]   UPK3BL [ EBI - ARRAY_EXPRESS ]   UPK3BL [ SEEK ]   UPK3BL [ MEM ]
Gene Expression Viewer (FireBrowse)UPK3BL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100134938
GTEX Portal (Tissue expression)UPK3BL
Protein : pattern, domain, 3D structure
UniProt/SwissProtB0FP48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB0FP48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB0FP48
Splice isoforms : SwissVarB0FP48
PhosPhoSitePlusB0FP48
Domains : Interpro (EBI)Uroplakin-3    Uroplakin-3b-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UPK3BL
DMDM Disease mutations100134938
Blocks (Seattle)UPK3BL
SuperfamilyB0FP48
Human Protein AtlasENSG00000267368
Peptide AtlasB0FP48
IPIIPI00514244   
Protein Interaction databases
DIP (DOE-UCLA)B0FP48
IntAct (EBI)B0FP48
FunCoupENSG00000267368
BioGRIDUPK3BL
STRING (EMBL)UPK3BL
ZODIACUPK3BL
Ontologies - Pathways
QuickGOB0FP48
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkUPK3BL
Atlas of Cancer Signalling NetworkUPK3BL
Wikipedia pathwaysUPK3BL
Orthology - Evolution
OrthoDB100134938
GeneTree (enSembl)ENSG00000267368
Phylogenetic Trees/Animal Genes : TreeFamUPK3BL
HOVERGENB0FP48
HOGENOMB0FP48
Homologs : HomoloGeneUPK3BL
Homology/Alignments : Family Browser (UCSC)UPK3BL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUPK3BL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UPK3BL
dbVarUPK3BL
ClinVarUPK3BL
1000_GenomesUPK3BL 
Exome Variant ServerUPK3BL
ExAC (Exome Aggregation Consortium)UPK3BL (select the gene name)
Genetic variants : HAPMAP100134938
Genomic Variants (DGV)UPK3BL [DGVbeta]
DECIPHER (Syndromes)7:102277472-102283238  ENSG00000267368
CONAN: Copy Number AnalysisUPK3BL 
Mutations
ICGC Data PortalUPK3BL 
TCGA Data PortalUPK3BL 
Broad Tumor PortalUPK3BL
OASIS PortalUPK3BL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUPK3BL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUPK3BL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UPK3BL
DgiDB (Drug Gene Interaction Database)UPK3BL
DoCM (Curated mutations)UPK3BL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UPK3BL (select a term)
intoGenUPK3BL
Cancer3DUPK3BL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUPK3BL
Genetic Testing Registry UPK3BL
NextProtB0FP48 [Medical]
TSGene100134938
GENETestsUPK3BL
Huge Navigator UPK3BL [HugePedia]
snp3D : Map Gene to Disease100134938
BioCentury BCIQUPK3BL
ClinGenUPK3BL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100134938
Chemical/Pharm GKB GenePA165618441
Clinical trialUPK3BL
Miscellaneous
canSAR (ICR)UPK3BL (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUPK3BL
EVEXUPK3BL
GoPubMedUPK3BL
iHOPUPK3BL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:52 CET 2017

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