Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

URB1 (URB1 ribosome biogenesis 1 homolog (S. cerevisiae))

Identity

Alias_namesC21orf108
chromosome 21 open reading frame 108
Alias_symbol (synonym)KIAA0539
NPA1
Other alias
HGNC (Hugo) URB1
LocusID (NCBI) 9875
Atlas_Id 75511
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 33683330 and ends at 33765312 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)URB1   17344
Cards
Entrez_Gene (NCBI)URB1  9875  URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
AliasesC21orf108; NPA1
GeneCards (Weizmann)URB1
Ensembl hg19 (Hinxton)ENSG00000142207 [Gene_View]  chr21:33683330-33765312 [Contig_View]  URB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142207 [Gene_View]  chr21:33683330-33765312 [Contig_View]  URB1 [Vega]
ICGC DataPortalENSG00000142207
TCGA cBioPortalURB1
AceView (NCBI)URB1
Genatlas (Paris)URB1
WikiGenes9875
SOURCE (Princeton)URB1
Genetics Home Reference (NIH)URB1
Genomic and cartography
GoldenPath hg19 (UCSC)URB1  -     chr21:33683330-33765312 -  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)URB1  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblURB1 - 21q22.11 [CytoView hg19]  URB1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIURB1 [Mapview hg19]  URB1 [Mapview hg38]
OMIM608865   
Gene and transcription
Genbank (Entrez)AB011111 AF231919 AF432264 BC041033 BC062356
RefSeq transcript (Entrez)NM_014825
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)URB1
Cluster EST : UnigeneHs.473611 [ NCBI ]
CGAP (NCI)Hs.473611
Alternative Splicing GalleryENSG00000142207
Gene ExpressionURB1 [ NCBI-GEO ]   URB1 [ EBI - ARRAY_EXPRESS ]   URB1 [ SEEK ]   URB1 [ MEM ]
Gene Expression Viewer (FireBrowse)URB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9875
GTEX Portal (Tissue expression)URB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60287   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60287  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60287
Splice isoforms : SwissVarO60287
PhosPhoSitePlusO60287
Domains : Interpro (EBI)ARM-type_fold    Npa1_N   
Domain families : Pfam (Sanger)Npa1 (PF11707)   
Domain families : Pfam (NCBI)pfam11707   
Conserved Domain (NCBI)URB1
DMDM Disease mutations9875
Blocks (Seattle)URB1
SuperfamilyO60287
Human Protein AtlasENSG00000142207
Peptide AtlasO60287
IPIIPI00297241   
Protein Interaction databases
DIP (DOE-UCLA)O60287
IntAct (EBI)O60287
FunCoupENSG00000142207
BioGRIDURB1
STRING (EMBL)URB1
ZODIACURB1
Ontologies - Pathways
QuickGOO60287
Ontology : AmiGOnucleolus  nucleolus  biological_process  poly(A) RNA binding  
Ontology : EGO-EBInucleolus  nucleolus  biological_process  poly(A) RNA binding  
NDEx NetworkURB1
Atlas of Cancer Signalling NetworkURB1
Wikipedia pathwaysURB1
Orthology - Evolution
OrthoDB9875
GeneTree (enSembl)ENSG00000142207
Phylogenetic Trees/Animal Genes : TreeFamURB1
HOVERGENO60287
HOGENOMO60287
Homologs : HomoloGeneURB1
Homology/Alignments : Family Browser (UCSC)URB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerURB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)URB1
dbVarURB1
ClinVarURB1
1000_GenomesURB1 
Exome Variant ServerURB1
ExAC (Exome Aggregation Consortium)URB1 (select the gene name)
Genetic variants : HAPMAP9875
Genomic Variants (DGV)URB1 [DGVbeta]
DECIPHER (Syndromes)21:33683330-33765312  ENSG00000142207
CONAN: Copy Number AnalysisURB1 
Mutations
ICGC Data PortalURB1 
TCGA Data PortalURB1 
Broad Tumor PortalURB1
OASIS PortalURB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICURB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDURB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch URB1
DgiDB (Drug Gene Interaction Database)URB1
DoCM (Curated mutations)URB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)URB1 (select a term)
intoGenURB1
Cancer3DURB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608865   
Orphanet
MedgenURB1
Genetic Testing Registry URB1
NextProtO60287 [Medical]
TSGene9875
GENETestsURB1
Huge Navigator URB1 [HugePedia]
snp3D : Map Gene to Disease9875
BioCentury BCIQURB1
ClinGenURB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9875
Chemical/Pharm GKB GenePA162408676
Clinical trialURB1
Miscellaneous
canSAR (ICR)URB1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineURB1
EVEXURB1
GoPubMedURB1
iHOPURB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:50:54 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.