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URB2 (URB2 ribosome biogenesis 2 homolog (S. cerevisiae))

Identity

Alias_namesKIAA0133
KIAA0133
Alias_symbol (synonym)NPA2
NET10
Other alias
HGNC (Hugo) URB2
LocusID (NCBI) 9816
Atlas_Id 75512
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229626216 and ends at 229660200 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)URB2   28967
Cards
Entrez_Gene (NCBI)URB2  9816  URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
AliasesKIAA0133; NET10; NPA2
GeneCards (Weizmann)URB2
Ensembl hg19 (Hinxton)ENSG00000135763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135763 [Gene_View]  chr1:229626216-229660200 [Contig_View]  URB2 [Vega]
ICGC DataPortalENSG00000135763
TCGA cBioPortalURB2
AceView (NCBI)URB2
Genatlas (Paris)URB2
WikiGenes9816
SOURCE (Princeton)URB2
Genetics Home Reference (NIH)URB2
Genomic and cartography
GoldenPath hg38 (UCSC)URB2  -     chr1:229626216-229660200 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)URB2  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblURB2 - 1q42.13 [CytoView hg19]  URB2 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIURB2 [Mapview hg19]  URB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291013 AW611528 BC059381 BC114559 BC114963
RefSeq transcript (Entrez)NM_001314021 NM_014777
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)URB2
Cluster EST : UnigeneHs.533628 [ NCBI ]
CGAP (NCI)Hs.533628
Alternative Splicing GalleryENSG00000135763
Gene ExpressionURB2 [ NCBI-GEO ]   URB2 [ EBI - ARRAY_EXPRESS ]   URB2 [ SEEK ]   URB2 [ MEM ]
Gene Expression Viewer (FireBrowse)URB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9816
GTEX Portal (Tissue expression)URB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14146   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14146  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14146
Splice isoforms : SwissVarQ14146
PhosPhoSitePlusQ14146
Domains : Interpro (EBI)Urb2/Npa2_C   
Domain families : Pfam (Sanger)Urb2 (PF10441)   
Domain families : Pfam (NCBI)pfam10441   
Conserved Domain (NCBI)URB2
DMDM Disease mutations9816
Blocks (Seattle)URB2
SuperfamilyQ14146
Human Protein AtlasENSG00000135763
Peptide AtlasQ14146
HPRD17178
IPIIPI00028980   IPI00647910   
Protein Interaction databases
DIP (DOE-UCLA)Q14146
IntAct (EBI)Q14146
FunCoupENSG00000135763
BioGRIDURB2
STRING (EMBL)URB2
ZODIACURB2
Ontologies - Pathways
QuickGOQ14146
Ontology : AmiGOnucleolus  nucleolus  aggresome  midbody  ribosome biogenesis  
Ontology : EGO-EBInucleolus  nucleolus  aggresome  midbody  ribosome biogenesis  
NDEx NetworkURB2
Atlas of Cancer Signalling NetworkURB2
Wikipedia pathwaysURB2
Orthology - Evolution
OrthoDB9816
GeneTree (enSembl)ENSG00000135763
Phylogenetic Trees/Animal Genes : TreeFamURB2
HOVERGENQ14146
HOGENOMQ14146
Homologs : HomoloGeneURB2
Homology/Alignments : Family Browser (UCSC)URB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerURB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)URB2
dbVarURB2
ClinVarURB2
1000_GenomesURB2 
Exome Variant ServerURB2
ExAC (Exome Aggregation Consortium)URB2 (select the gene name)
Genetic variants : HAPMAP9816
Genomic Variants (DGV)URB2 [DGVbeta]
DECIPHERURB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisURB2 
Mutations
ICGC Data PortalURB2 
TCGA Data PortalURB2 
Broad Tumor PortalURB2
OASIS PortalURB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICURB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDURB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch URB2
DgiDB (Drug Gene Interaction Database)URB2
DoCM (Curated mutations)URB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)URB2 (select a term)
intoGenURB2
Cancer3DURB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenURB2
Genetic Testing Registry URB2
NextProtQ14146 [Medical]
TSGene9816
GENETestsURB2
Huge Navigator URB2 [HugePedia]
snp3D : Map Gene to Disease9816
BioCentury BCIQURB2
ClinGenURB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9816
Chemical/Pharm GKB GenePA164727496
Clinical trialURB2
Miscellaneous
canSAR (ICR)URB2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineURB2
EVEXURB2
GoPubMedURB2
iHOPURB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:00:50 CEST 2017

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