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URGCP (upregulator of cell proliferation)

Identity

Alias_symbol (synonym)URG4
KIAA1507
FLJ20654
DKFZp666G166
DKFZp686O0457
Other alias
HGNC (Hugo) URGCP
LocusID (NCBI) 55665
Atlas_Id 45759
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 43915493 and ends at 43946668 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
URGCP (7p13) / CCDC129 (7p14.3)URGCP (7p13) / MRPS24 (7p13)URGCP 7p13 / CCDC129 7p14.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)URGCP   30890
Cards
Entrez_Gene (NCBI)URGCP  55665  upregulator of cell proliferation
AliasesURG4
GeneCards (Weizmann)URGCP
Ensembl hg19 (Hinxton)ENSG00000106608 [Gene_View]  chr7:43915493-43946668 [Contig_View]  URGCP [Vega]
Ensembl hg38 (Hinxton)ENSG00000106608 [Gene_View]  chr7:43915493-43946668 [Contig_View]  URGCP [Vega]
ICGC DataPortalENSG00000106608
TCGA cBioPortalURGCP
AceView (NCBI)URGCP
Genatlas (Paris)URGCP
WikiGenes55665
SOURCE (Princeton)URGCP
Genetics Home Reference (NIH)URGCP
Genomic and cartography
GoldenPath hg19 (UCSC)URGCP  -     chr7:43915493-43946668 -  7p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)URGCP  -     7p13   [Description]    (hg38-Dec_2013)
EnsemblURGCP - 7p13 [CytoView hg19]  URGCP - 7p13 [CytoView hg38]
Mapping of homologs : NCBIURGCP [Mapview hg19]  URGCP [Mapview hg38]
OMIM610337   
Gene and transcription
Genbank (Entrez)AB040940 AK000661 AK026185 AK302459 AK314339
RefSeq transcript (Entrez)NM_001077663 NM_001077664 NM_001290075 NM_001290076 NM_017920
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)URGCP
Cluster EST : UnigeneHs.663312 [ NCBI ]
CGAP (NCI)Hs.663312
Alternative Splicing GalleryENSG00000106608
Gene ExpressionURGCP [ NCBI-GEO ]   URGCP [ EBI - ARRAY_EXPRESS ]   URGCP [ SEEK ]   URGCP [ MEM ]
Gene Expression Viewer (FireBrowse)URGCP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55665
GTEX Portal (Tissue expression)URGCP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCY9
Splice isoforms : SwissVarQ8TCY9
PhosPhoSitePlusQ8TCY9
Domaine pattern : Prosite (Expaxy)G_VLIG (PS51717)   
Domains : Interpro (EBI)G_VLIG_dom    GTP_binding_domain    P-loop_NTPase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)URGCP
DMDM Disease mutations55665
Blocks (Seattle)URGCP
SuperfamilyQ8TCY9
Human Protein AtlasENSG00000106608
Peptide AtlasQ8TCY9
HPRD11663
IPIIPI00845273   IPI00816121   IPI00743955   IPI00926991   IPI00927089   IPI00927288   IPI00927493   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCY9
IntAct (EBI)Q8TCY9
FunCoupENSG00000106608
BioGRIDURGCP
STRING (EMBL)URGCP
ZODIACURGCP
Ontologies - Pathways
QuickGOQ8TCY9
Ontology : AmiGOGTP binding  nucleus  cytoplasm  cell cycle  
Ontology : EGO-EBIGTP binding  nucleus  cytoplasm  cell cycle  
NDEx NetworkURGCP
Atlas of Cancer Signalling NetworkURGCP
Wikipedia pathwaysURGCP
Orthology - Evolution
OrthoDB55665
GeneTree (enSembl)ENSG00000106608
Phylogenetic Trees/Animal Genes : TreeFamURGCP
HOVERGENQ8TCY9
HOGENOMQ8TCY9
Homologs : HomoloGeneURGCP
Homology/Alignments : Family Browser (UCSC)URGCP
Gene fusions - Rearrangements
Fusion : MitelmanURGCP/CCDC129 [7p13/7p14.3]  
Fusion: TCGAURGCP 7p13 CCDC129 7p14.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerURGCP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)URGCP
dbVarURGCP
ClinVarURGCP
1000_GenomesURGCP 
Exome Variant ServerURGCP
ExAC (Exome Aggregation Consortium)URGCP (select the gene name)
Genetic variants : HAPMAP55665
Genomic Variants (DGV)URGCP [DGVbeta]
DECIPHER (Syndromes)7:43915493-43946668  ENSG00000106608
CONAN: Copy Number AnalysisURGCP 
Mutations
ICGC Data PortalURGCP 
TCGA Data PortalURGCP 
Broad Tumor PortalURGCP
OASIS PortalURGCP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICURGCP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDURGCP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch URGCP
DgiDB (Drug Gene Interaction Database)URGCP
DoCM (Curated mutations)URGCP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)URGCP (select a term)
intoGenURGCP
Cancer3DURGCP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610337   
Orphanet
MedgenURGCP
Genetic Testing Registry URGCP
NextProtQ8TCY9 [Medical]
TSGene55665
GENETestsURGCP
Huge Navigator URGCP [HugePedia]
snp3D : Map Gene to Disease55665
BioCentury BCIQURGCP
ClinGenURGCP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55665
Chemical/Pharm GKB GenePA165618458
Clinical trialURGCP
Miscellaneous
canSAR (ICR)URGCP (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineURGCP
EVEXURGCP
GoPubMedURGCP
iHOPURGCP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:27 CEST 2017

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