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URM1 (ubiquitin related modifier 1)

Identity

Alias_namesC9orf74
chromosome 9 open reading frame 74
ubiquitin related modifier 1 homolog (S. cerevisiae)
Alias_symbol (synonym)MGC2668
Other alias
HGNC (Hugo) URM1
LocusID (NCBI) 81605
Atlas_Id 75514
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128371319 and ends at 128392016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACTN4 (19q13.2) / URM1 (9q34.11)SMOX (20p13) / URM1 (9q34.11)SRP68 (17q25.1) / URM1 (9q34.11)
URM1 (9q34.11) / ARPC2 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)URM1   28378
Cards
Entrez_Gene (NCBI)URM1  81605  ubiquitin related modifier 1
AliasesC9orf74
GeneCards (Weizmann)URM1
Ensembl hg19 (Hinxton)ENSG00000167118 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167118 [Gene_View]  chr9:128371319-128392016 [Contig_View]  URM1 [Vega]
ICGC DataPortalENSG00000167118
TCGA cBioPortalURM1
AceView (NCBI)URM1
Genatlas (Paris)URM1
WikiGenes81605
SOURCE (Princeton)URM1
Genetics Home Reference (NIH)URM1
Genomic and cartography
GoldenPath hg38 (UCSC)URM1  -     chr9:128371319-128392016 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)URM1  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblURM1 - 9q34.11 [CytoView hg19]  URM1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIURM1 [Mapview hg19]  URM1 [Mapview hg38]
OMIM612693   
Gene and transcription
Genbank (Entrez)AI872337 AK001880 AK097029 AK300877 BC003581
RefSeq transcript (Entrez)NM_001135947 NM_001265582 NM_030914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)URM1
Cluster EST : UnigeneHs.495229 [ NCBI ]
CGAP (NCI)Hs.495229
Alternative Splicing GalleryENSG00000167118
Gene ExpressionURM1 [ NCBI-GEO ]   URM1 [ EBI - ARRAY_EXPRESS ]   URM1 [ SEEK ]   URM1 [ MEM ]
Gene Expression Viewer (FireBrowse)URM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81605
GTEX Portal (Tissue expression)URM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTM9
Splice isoforms : SwissVarQ9BTM9
PhosPhoSitePlusQ9BTM9
Domains : Interpro (EBI)Beta-grasp_dom    Mopterin_synth/thiamin_S_b    Urm1   
Domain families : Pfam (Sanger)Urm1 (PF09138)   
Domain families : Pfam (NCBI)pfam09138   
Conserved Domain (NCBI)URM1
DMDM Disease mutations81605
Blocks (Seattle)URM1
SuperfamilyQ9BTM9
Human Protein AtlasENSG00000167118
Peptide AtlasQ9BTM9
HPRD12976
IPIIPI00008445   IPI00910850   IPI00642486   IPI00513849   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTM9
IntAct (EBI)Q9BTM9
FunCoupENSG00000167118
BioGRIDURM1
STRING (EMBL)URM1
ZODIACURM1
Ontologies - Pathways
QuickGOQ9BTM9
Ontology : AmiGOtRNA wobble uridine modification  protein binding  cytosol  cytosol  tRNA modification  sulfurtransferase activity  tRNA thio-modification  extracellular exosome  
Ontology : EGO-EBItRNA wobble uridine modification  protein binding  cytosol  cytosol  tRNA modification  sulfurtransferase activity  tRNA thio-modification  extracellular exosome  
Pathways : KEGGSulfur relay system   
NDEx NetworkURM1
Atlas of Cancer Signalling NetworkURM1
Wikipedia pathwaysURM1
Orthology - Evolution
OrthoDB81605
GeneTree (enSembl)ENSG00000167118
Phylogenetic Trees/Animal Genes : TreeFamURM1
HOVERGENQ9BTM9
HOGENOMQ9BTM9
Homologs : HomoloGeneURM1
Homology/Alignments : Family Browser (UCSC)URM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerURM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)URM1
dbVarURM1
ClinVarURM1
1000_GenomesURM1 
Exome Variant ServerURM1
ExAC (Exome Aggregation Consortium)URM1 (select the gene name)
Genetic variants : HAPMAP81605
Genomic Variants (DGV)URM1 [DGVbeta]
DECIPHERURM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisURM1 
Mutations
ICGC Data PortalURM1 
TCGA Data PortalURM1 
Broad Tumor PortalURM1
OASIS PortalURM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICURM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDURM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch URM1
DgiDB (Drug Gene Interaction Database)URM1
DoCM (Curated mutations)URM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)URM1 (select a term)
intoGenURM1
Cancer3DURM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612693   
Orphanet
MedgenURM1
Genetic Testing Registry URM1
NextProtQ9BTM9 [Medical]
TSGene81605
GENETestsURM1
Target ValidationURM1
Huge Navigator URM1 [HugePedia]
snp3D : Map Gene to Disease81605
BioCentury BCIQURM1
ClinGenURM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81605
Chemical/Pharm GKB GenePA162408677
Clinical trialURM1
Miscellaneous
canSAR (ICR)URM1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineURM1
EVEXURM1
GoPubMedURM1
iHOPURM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:20 CEST 2017

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