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USE1 (unconventional SNARE in the ER 1)

Identity

Alias_namesunconventional SNARE in the ER 1 homolog (S. cerevisiae)
Alias_symbol (synonym)p31
SLT1
MDS032
D12
Other aliasP31
HGNC (Hugo) USE1
LocusID (NCBI) 55850
Atlas_Id 75517
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17215346 and ends at 17219829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USE1   30882
Cards
Entrez_Gene (NCBI)USE1  55850  unconventional SNARE in the ER 1
AliasesD12; MDS032; P31; SLT1
GeneCards (Weizmann)USE1
Ensembl hg19 (Hinxton)ENSG00000053501 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000053501 [Gene_View]  chr19:17215346-17219829 [Contig_View]  USE1 [Vega]
ICGC DataPortalENSG00000053501
TCGA cBioPortalUSE1
AceView (NCBI)USE1
Genatlas (Paris)USE1
WikiGenes55850
SOURCE (Princeton)USE1
Genetics Home Reference (NIH)USE1
Genomic and cartography
GoldenPath hg38 (UCSC)USE1  -     chr19:17215346-17219829 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USE1  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblUSE1 - 19p13.11 [CytoView hg19]  USE1 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIUSE1 [Mapview hg19]  USE1 [Mapview hg38]
OMIM610675   
Gene and transcription
Genbank (Entrez)AB097050 AF220052 AK074683 AM393803 BC006005
RefSeq transcript (Entrez)NM_018467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USE1
Cluster EST : UnigeneHs.16187 [ NCBI ]
CGAP (NCI)Hs.16187
Alternative Splicing GalleryENSG00000053501
Gene ExpressionUSE1 [ NCBI-GEO ]   USE1 [ EBI - ARRAY_EXPRESS ]   USE1 [ SEEK ]   USE1 [ MEM ]
Gene Expression Viewer (FireBrowse)USE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55850
GTEX Portal (Tissue expression)USE1
Human Protein AtlasENSG00000053501-USE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ43
Splice isoforms : SwissVarQ9NZ43
PhosPhoSitePlusQ9NZ43
Domains : Interpro (EBI)Vesicle_transport_protein_Use1   
Domain families : Pfam (Sanger)Use1 (PF09753)   
Domain families : Pfam (NCBI)pfam09753   
Conserved Domain (NCBI)USE1
DMDM Disease mutations55850
Blocks (Seattle)USE1
SuperfamilyQ9NZ43
Human Protein Atlas [tissue]ENSG00000053501-USE1 [tissue]
Peptide AtlasQ9NZ43
HPRD11299
IPIIPI00020515   IPI00549501   IPI00549814   IPI01012197   IPI01012662   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ43
IntAct (EBI)Q9NZ43
FunCoupENSG00000053501
BioGRIDUSE1
STRING (EMBL)USE1
ZODIACUSE1
Ontologies - Pathways
QuickGOQ9NZ43
Ontology : AmiGOprotein binding  lysosome  endoplasmic reticulum  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  lysosomal transport  protein transport  integral component of membrane  protein catabolic process  secretion by cell  
Ontology : EGO-EBIprotein binding  lysosome  endoplasmic reticulum  endoplasmic reticulum membrane  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  lysosomal transport  protein transport  integral component of membrane  protein catabolic process  secretion by cell  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkUSE1
Atlas of Cancer Signalling NetworkUSE1
Wikipedia pathwaysUSE1
Orthology - Evolution
OrthoDB55850
GeneTree (enSembl)ENSG00000053501
Phylogenetic Trees/Animal Genes : TreeFamUSE1
HOVERGENQ9NZ43
HOGENOMQ9NZ43
Homologs : HomoloGeneUSE1
Homology/Alignments : Family Browser (UCSC)USE1
Gene fusions - Rearrangements
Tumor Fusion PortalUSE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USE1
dbVarUSE1
ClinVarUSE1
1000_GenomesUSE1 
Exome Variant ServerUSE1
ExAC (Exome Aggregation Consortium)ENSG00000053501
GNOMAD BrowserENSG00000053501
Genetic variants : HAPMAP55850
Genomic Variants (DGV)USE1 [DGVbeta]
DECIPHERUSE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSE1 
Mutations
ICGC Data PortalUSE1 
TCGA Data PortalUSE1 
Broad Tumor PortalUSE1
OASIS PortalUSE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUSE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch USE1
DgiDB (Drug Gene Interaction Database)USE1
DoCM (Curated mutations)USE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USE1 (select a term)
intoGenUSE1
Cancer3DUSE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610675   
Orphanet
DisGeNETUSE1
MedgenUSE1
Genetic Testing Registry USE1
NextProtQ9NZ43 [Medical]
TSGene55850
GENETestsUSE1
Target ValidationUSE1
Huge Navigator USE1 [HugePedia]
snp3D : Map Gene to Disease55850
BioCentury BCIQUSE1
ClinGenUSE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55850
Chemical/Pharm GKB GenePA162408692
Clinical trialUSE1
Miscellaneous
canSAR (ICR)USE1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSE1
EVEXUSE1
GoPubMedUSE1
iHOPUSE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:21:01 CET 2017

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