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USF2 (upstream transcription factor 2, c-fos interacting)

Identity

Other namesFIP
bHLHb12
HGNC (Hugo) USF2
LocusID (NCBI) 7392
Location 19q13.12
Location_base_pair Starts at 35759896 and ends at 35770718 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)USF2   12594
Entrez_Gene (NCBI)USF2  7392  upstream transcription factor 2, c-fos interacting
Cards
GeneCards (Weizmann)USF2
Ensembl (Hinxton)ENSG00000105698 [Gene_View]  chr19:35759896-35770718 [Contig_View]  USF2 [Vega]
AceView (NCBI)USF2
Genatlas (Paris)USF2
SOURCE (Stanford)NM_003367 NM_207291
Genomic and cartography
GoldenPath (UCSC)USF2  -  19q13.12   chr19:35759896-35770718 +  19q13.12   [Description]    (hg19-Feb_2009)
EnsemblUSF2 - 19q13.12 [CytoView]
Mapping of homologs : NCBIUSF2 [Mapview]
OMIM600390   
Gene and transcription
Genbank (Entrez)AK297022 AY007087 AY147880 BC042655 BC049821
RefSeq transcript (SRS)NM_003367 NM_207291
RefSeq transcript (Entrez)NM_003367 NM_207291
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NG_029241 NT_011109 NW_001838494 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_029241 NT_011109 NW_001838494 NW_004078099
Consensus coding sequences : CCDS (NCBI)USF2
Cluster EST : UnigeneHs.454534 [ SRS ] Hs.454534 [ NCBI ]
CGAP (NCI)Hs.454534
Alternative Splicing : Fast-db (Paris)GSHG0014824
Alternative Splicing GalleryENSG00000105698
Gene ExpressionUSF2 [ NCBI-GEO ]   USF2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15853 (SRS) Q15853 (Uniprot)
NextProtQ15853
With graphics : InterProQ15853
Splice isoforms : SwissVarQ15853(Swissvar)
Domaine pattern : Prosite (SRS)BHLH (PS50888)   
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (SRS)HLH_dom   
Domains : Interpro (EBI)HLH_dom   
Related proteins : CluSTrQ15853
Domain families : Pfam (SRS)HLH (PF00010)   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
DMDM7392
Blocks (Seattle)Q15853
Human Protein AtlasENSG00000105698
HPRD02668
IPIIPI00020037   IPI00216376   IPI00216377   IPI00910387   IPI00432448   
Protein Interaction databases
DIP (DOE-UCLA)Q15853
IntAct (EBI)Q15853
FunCoupENSG00000105698
REACTOMEUSF2
Protein Interaction Database7392
BioGRIDUSF2
InParanoidQ15853
Interologous Interaction database Q15853
IntegromeDBUSF2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)USF2
SNP (GeneSNP Utah)USF2
SNP : HGBaseUSF2
Genetic variants : HAPMAPUSF2
Somatic Mutations in Cancer : COSMICUSF2 
CONAN: Copy Number AnalysisUSF2 
Mutations and Diseases : HGMDUSF2
OMIM600390   
GENETests600390   
Disease Genetic AssociationUSF2
Huge Navigator USF2 [HugePedia]  USF2 [HugeCancerGEM]
Genomic VariantsUSF2  USF2 [DGVbeta]
snp3D : Map Gene to Disease7392
General knowledge
Homologs : HomoloGeneUSF2
Homology/Alignments : Family Browser (UCSC)USF2
Phylogenetic Trees/Animal Genes : TreeFamUSF2
Chemical/Protein Interactions : CTD7392
Chemical/Pharm GKB GenePA37224
Clinical trialUSF2
Cancer Resource (Charite)ENSG00000105698
Ontology : AmiGOregulation of transcription from RNA polymerase II promoter by glucose  positive regulation of transcription from RNA polymerase II promoter by glucose  positive regulation of transcription from RNA polymerase II promoter by glucose  double-stranded DNA binding  sequence-specific DNA binding transcription factor activity  RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-dependent  lactation  late viral mRNA transcription  protein homodimerization activity  bHLH transcription factor binding  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  lipid homeostasis  
Ontology : EGO-EBIregulation of transcription from RNA polymerase II promoter by glucose  positive regulation of transcription from RNA polymerase II promoter by glucose  positive regulation of transcription from RNA polymerase II promoter by glucose  double-stranded DNA binding  sequence-specific DNA binding transcription factor activity  RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-dependent  lactation  late viral mRNA transcription  protein homodimerization activity  bHLH transcription factor binding  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  lipid homeostasis  
Other databases
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
PubGeneUSF2
iHOPUSF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:38:02 CEST 2013
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