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USF2 (upstream transcription factor 2, c-fos interacting)

Identity

Alias_symbol (synonym)FIP
bHLHb12
Other alias
HGNC (Hugo) USF2
LocusID (NCBI) 7392
Atlas_Id 46357
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35268978 and ends at 35279821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDC5L (6p21.1) / USF2 (19q13.12)TNNI3 (19q13.42) / USF2 (19q13.12)USF2 (19q13.12) / CDC5L (6p21.1)
USF2 (19q13.12) / IRX3 (16q12.2)USF2 (19q13.12) / USF2 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t1619q12q13ID102268


External links

Nomenclature
HGNC (Hugo)USF2   12594
Cards
Entrez_Gene (NCBI)USF2  7392  upstream transcription factor 2, c-fos interacting
AliasesFIP; bHLHb12
GeneCards (Weizmann)USF2
Ensembl hg19 (Hinxton)ENSG00000105698 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105698 [Gene_View]  ENSG00000105698 [Sequence]  chr19:35268978-35279821 [Contig_View]  USF2 [Vega]
ICGC DataPortalENSG00000105698
TCGA cBioPortalUSF2
AceView (NCBI)USF2
Genatlas (Paris)USF2
WikiGenes7392
SOURCE (Princeton)USF2
Genetics Home Reference (NIH)USF2
Genomic and cartography
GoldenPath hg38 (UCSC)USF2  -     chr19:35268978-35279821 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USF2  -     19q13.12   [Description]    (hg19-Feb_2009)
GoldenPathUSF2 - 19q13.12 [CytoView hg19]  USF2 - 19q13.12 [CytoView hg38]
ImmunoBaseENSG00000105698
Mapping of homologs : NCBIUSF2 [Mapview hg19]  USF2 [Mapview hg38]
OMIM600390   
Gene and transcription
Genbank (Entrez)AI240594 AK297022 AY147880 BC042655 BC049821
RefSeq transcript (Entrez)NM_001321150 NM_003367 NM_207291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USF2
Alternative Splicing GalleryENSG00000105698
Gene ExpressionUSF2 [ NCBI-GEO ]   USF2 [ EBI - ARRAY_EXPRESS ]   USF2 [ SEEK ]   USF2 [ MEM ]
Gene Expression Viewer (FireBrowse)USF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7392
GTEX Portal (Tissue expression)USF2
Human Protein AtlasENSG00000105698-USF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)USF2
DMDM Disease mutations7392
Blocks (Seattle)USF2
Human Protein Atlas [tissue]ENSG00000105698-USF2 [tissue]
HPRD02668
IPIIPI00020037   IPI00216376   IPI00216377   IPI00910387   IPI00432448   
Protein Interaction databases
FunCoupENSG00000105698
BioGRIDUSF2
STRING (EMBL)USF2
ZODIACUSF2
Ontologies - Pathways
Huge Navigator USF2 [HugePedia]
snp3D : Map Gene to Disease7392
BioCentury BCIQUSF2
ClinGenUSF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7392
Chemical/Pharm GKB GenePA37224
Clinical trialUSF2
Miscellaneous
canSAR (ICR)USF2 (select the gene name)
DataMed IndexUSF2
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSF2
EVEXUSF2
GoPubMedUSF2
iHOPUSF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:15:43 CET 2020

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