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USF3 (upstream transcription factor family member 3)

Identity

Other aliasKIAA2018
HGNC (Hugo) USF3
LocusID (NCBI) 205717
Atlas_Id 57099
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 113653745 and ends at 113660005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MAN1A2 (1p12) / USF3 (3q13.2)USF3 (3q13.2) / RPL35A (3q29)USF3 (3q13.2) / TAX1BP3 (17p13.2)
USF3 (3q13.2) / USF3 (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)USF3   30494
Cards
Entrez_Gene (NCBI)USF3  205717  upstream transcription factor family member 3
AliasesKIAA2018
GeneCards (Weizmann)USF3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:113653745-113660005 [Contig_View]  USF3 [Vega]
TCGA cBioPortalUSF3
AceView (NCBI)USF3
Genatlas (Paris)USF3
WikiGenes205717
SOURCE (Princeton)USF3
Genetics Home Reference (NIH)USF3
Genomic and cartography
GoldenPath hg38 (UCSC)USF3  -     chr3:113653745-113660005 -  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USF3  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblUSF3 - 3q13.2 [CytoView hg19]  USF3 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBIUSF3 [Mapview hg19]  USF3 [Mapview hg38]
OMIM617568   
Gene and transcription
Genbank (Entrez)AB095938 BC043383 BX537728 CR749439
RefSeq transcript (Entrez)NM_001009899
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USF3
Cluster EST : UnigeneHs.632570 [ NCBI ]
CGAP (NCI)Hs.632570
Gene ExpressionUSF3 [ NCBI-GEO ]   USF3 [ EBI - ARRAY_EXPRESS ]   USF3 [ SEEK ]   USF3 [ MEM ]
Gene Expression Viewer (FireBrowse)USF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)205717
GTEX Portal (Tissue expression)USF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DE3
Splice isoforms : SwissVarQ68DE3
PhosPhoSitePlusQ68DE3
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)USF3
DMDM Disease mutations205717
Blocks (Seattle)USF3
SuperfamilyQ68DE3
Peptide AtlasQ68DE3
IPIIPI00217002   IPI00829891   
Protein Interaction databases
DIP (DOE-UCLA)Q68DE3
IntAct (EBI)Q68DE3
BioGRIDUSF3
STRING (EMBL)USF3
ZODIACUSF3
Ontologies - Pathways
QuickGOQ68DE3
Ontology : AmiGOGolgi membrane  DNA binding  mannosyl-oligosaccharide 1,2-alpha-mannosidase activity  nucleus  endoplasmic reticulum  N-glycan processing  protein dimerization activity  
Ontology : EGO-EBIGolgi membrane  DNA binding  mannosyl-oligosaccharide 1,2-alpha-mannosidase activity  nucleus  endoplasmic reticulum  N-glycan processing  protein dimerization activity  
NDEx NetworkUSF3
Atlas of Cancer Signalling NetworkUSF3
Wikipedia pathwaysUSF3
Orthology - Evolution
OrthoDB205717
Phylogenetic Trees/Animal Genes : TreeFamUSF3
HOVERGENQ68DE3
HOGENOMQ68DE3
Homologs : HomoloGeneUSF3
Homology/Alignments : Family Browser (UCSC)USF3
Gene fusions - Rearrangements
Tumor Fusion PortalUSF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USF3
dbVarUSF3
ClinVarUSF3
1000_GenomesUSF3 
Exome Variant ServerUSF3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP205717
Genomic Variants (DGV)USF3 [DGVbeta]
DECIPHERUSF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSF3 
Mutations
ICGC Data PortalUSF3 
TCGA Data PortalUSF3 
Broad Tumor PortalUSF3
OASIS PortalUSF3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDUSF3
BioMutasearch USF3
DgiDB (Drug Gene Interaction Database)USF3
DoCM (Curated mutations)USF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USF3 (select a term)
intoGenUSF3
Cancer3DUSF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617568   
Orphanet
DisGeNETUSF3
MedgenUSF3
Genetic Testing Registry USF3
NextProtQ68DE3 [Medical]
TSGene205717
GENETestsUSF3
Target ValidationUSF3
Huge Navigator USF3 [HugePedia]
snp3D : Map Gene to Disease205717
BioCentury BCIQUSF3
ClinGenUSF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD205717
Chemical/Pharm GKB GenePA142671594
Clinical trialUSF3
Miscellaneous
canSAR (ICR)USF3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSF3
EVEXUSF3
GoPubMedUSF3
iHOPUSF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:40:58 CET 2017

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